Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_C24
         (927 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024201-11|ABQ13050.1|  284|Caenorhabditis elegans Hypothetical...    51   1e-06
AC024201-10|ABQ13051.1|  281|Caenorhabditis elegans Hypothetical...    51   1e-06
Z81500-8|CAM84816.1|  284|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   2.7  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   2.7  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   2.7  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    29   6.2  

>AC024201-11|ABQ13050.1|  284|Caenorhabditis elegans Hypothetical
           protein Y71F9B.9a protein.
          Length = 284

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 31/121 (25%), Positives = 50/121 (41%)
 Frame = +1

Query: 196 VYDVVAKQITDAXEDXKXQLHTLENDGLLRGXLXASEXFXCXXGSXDLETAVXGAXFVPX 375
           +YD+  KQ+  A E+ +  L  L+  GL RG L A E       +  L   +  A ++  
Sbjct: 1   MYDISEKQLQVALENVEKNLRKLDEHGLQRGNLSADEALLRVSTTTSLNEVMKNAIYMQE 60

Query: 376 CVPXXLXLXKKVFXNLXXVVXDXXXLSXSXSTTXPSLFSERLXPTSHXIVSHPXXPPYXL 555
                L    + +  +  +      L+ S ST   S F++ L      ++ HP  PP  L
Sbjct: 61  SALEDLNFRIQFYKVIDEIADPTTILASSTSTIPASKFTDGLINKERCLIVHPVNPPLFL 120

Query: 556 P 558
           P
Sbjct: 121 P 121


>AC024201-10|ABQ13051.1|  281|Caenorhabditis elegans Hypothetical
           protein Y71F9B.9b protein.
          Length = 281

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 31/121 (25%), Positives = 50/121 (41%)
 Frame = +1

Query: 196 VYDVVAKQITDAXEDXKXQLHTLENDGLLRGXLXASEXFXCXXGSXDLETAVXGAXFVPX 375
           +YD+  KQ+  A E+ +  L  L+  GL RG L A E       +  L   +  A ++  
Sbjct: 1   MYDISEKQLQVALENVEKNLRKLDEHGLQRGNLSADEALLRVSTTTSLNEVMKNAIYMQE 60

Query: 376 CVPXXLXLXKKVFXNLXXVVXDXXXLSXSXSTTXPSLFSERLXPTSHXIVSHPXXPPYXL 555
                L    + +  +  +      L+ S ST   S F++ L      ++ HP  PP  L
Sbjct: 61  SALEDLNFRIQFYKVIDEIADPTTILASSTSTIPASKFTDGLINKERCLIVHPVNPPLFL 120

Query: 556 P 558
           P
Sbjct: 121 P 121


>Z81500-8|CAM84816.1|  284|Caenorhabditis elegans Hypothetical
           protein F11D11.14 protein.
          Length = 284

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 123 RDRWKWFNREIXGXVVCL 176
           RD WK F REI G VVC+
Sbjct: 131 RDGWKRFEREIDGTVVCM 148


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = +2

Query: 542 PLTXXPXVXPCPXXLDXASXXPRQPXXNXPXPSRXPPPPSXXP 670
           P+T  P   P P  L   S  P  P    P P   PPPP   P
Sbjct: 737 PITGGPPPPPPPGGLPPISGGPPPP---PPPPGGCPPPPPPPP 776


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = +2

Query: 542 PLTXXPXVXPCPXXLDXASXXPRQPXXNXPXPSRXPPPPSXXP 670
           P+T  P   P P  L   S  P  P    P P   PPPP   P
Sbjct: 737 PITGGPPPPPPPGGLPPISGGPPPP---PPPPGGCPPPPPPPP 776


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = +2

Query: 542 PLTXXPXVXPCPXXLDXASXXPRQPXXNXPXPSRXPPPPSXXP 670
           P+T  P   P P  L   S  P  P    P P   PPPP   P
Sbjct: 320 PITGGPPPPPPPGGLPPISGGPPPP---PPPPGGCPPPPPPPP 359


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = +2

Query: 596 SXXPRQPXXNXPXPSRXPP--PPSXXPXXXXR 685
           S  PR+P    P P R PP  PPS  P    R
Sbjct: 154 SPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPR 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,094,009
Number of Sequences: 27780
Number of extensions: 144574
Number of successful extensions: 1873
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1533
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)