Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_C22
(1414 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.51
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.67
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.2
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 28 3.6
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 8.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 8.3
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.51
Identities = 25/88 (28%), Positives = 30/88 (34%), Gaps = 3/88 (3%)
Frame = -1
Query: 760 SXPPXAPGXAXPR--RXPXSLXAGRRXPXXSAPXPRXXPXRVXRXXSLAXVFRPXPLPFX 587
S PP P + P R P L + R AP P L R P
Sbjct: 359 SAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVP 418
Query: 586 AXSRXXXPSXPPT-PPXXPXLSPPXXPL 506
PS PP+ PP P +PP P+
Sbjct: 419 TP-----PSLPPSAPPSLPPSAPPSLPM 441
Score = 27.1 bits (57), Expect = 6.3
Identities = 28/134 (20%), Positives = 32/134 (23%)
Frame = -2
Query: 480 KQXPXPXPPXPXXXXXRSRPXSXAAPXPPXPXXLXXPXXXSLAPAPAXXXSRXDXXPPXP 301
K+ P P PP P P + P P + P R PP P
Sbjct: 308 KKRPPPPPP-PSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Query: 300 XPPXXXXXXXXXXXXPSXXXXPXXCTPXXPXXIXTXISPPXAPTXRXXPXPXXAPPLXSP 121
P P P + PP R P PP P
Sbjct: 367 RSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPAL-PPLGNASRTSTPPVPTPPSLPP 425
Query: 120 LXXXIPXLXXGXPP 79
P L PP
Sbjct: 426 SAP--PSLPPSAPP 437
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 1031 PXXPPAAXLPXPXPPPXP 978
P PPAA P P P P P
Sbjct: 467 PPLPPAAPAPPPAPAPAP 484
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.67
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 1031 PXXPPAAXLPXPXPPPXPXPHP 966
P PPA +P P P P P P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPP 754
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 1.2
Identities = 34/151 (22%), Positives = 41/151 (27%), Gaps = 13/151 (8%)
Frame = -2
Query: 471 PXPXPPXPXXXXXRSRPXSXA-APXPPXPXXLXXPXXXSL-APAPAXXXSRXDXXPPXPX 298
P PP P P S + AP P P S+ AP+ A PP P
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPK 1096
Query: 297 P---------PXXXXXXXXXXXXPSXXXXPXXCTPXXPXXIXTXISPPXAPTXRXXPXPX 145
P P P P P P + P P
Sbjct: 1097 PSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPS 1156
Query: 144 XAPPLXSP--LXXXIPXLXXGXPPLEAXXXG 58
APP+ P +P G PP+ G
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAG 1187
Score = 29.1 bits (62), Expect = 1.6
Identities = 25/117 (21%), Positives = 31/117 (26%), Gaps = 1/117 (0%)
Frame = -2
Query: 423 PXSXAAPXPPXPXXLXXPXXXSLAPAPAXXXSRXDXXPPXPXPPXXXXXXXXXXXXPSXX 244
P + A P P P S P P PP P P
Sbjct: 1027 PSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVP-APSSEIPSIPAPSGAPPV 1085
Query: 243 XXPXXCTPXXPXXIXTXISPPXAPTXRXXPXPXXAPPLXSPLXXXIP-XLXXGXPPL 76
P P + P + P P APP+ P P + G PP+
Sbjct: 1086 PAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPV 1142
Score = 27.5 bits (58), Expect = 4.7
Identities = 35/148 (23%), Positives = 43/148 (29%), Gaps = 3/148 (2%)
Frame = -2
Query: 477 QXPXPXPPX-PXXXXXRSRPXSXAAPXPPXPXXLXXPXXXSLAPAPAXXXSRXDXXPPXP 301
+ P PP P + P + A PP P L A A PP P
Sbjct: 985 EPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVP 1044
Query: 300 XPPXXXXXXXXXXXXPSXXXXPXXCTPXXPXXIXTXISPPXAPTXRXXPXPXXAPPLXSP 121
P PS P I + +P AP P P PP+ P
Sbjct: 1045 IPTSTPPVPKSSSGAPSAPPP----VPAPSSEIPSIPAPSGAP---PVPAPSGIPPVPKP 1097
Query: 120 --LXXXIPXLXXGXPPLEAXXXGGGGPP 43
+P PP+ A G PP
Sbjct: 1098 SVAAPPVPKPSVAVPPVPAP---SGAPP 1122
Score = 26.6 bits (56), Expect = 8.3
Identities = 20/66 (30%), Positives = 20/66 (30%)
Frame = -3
Query: 239 PPXVAPXFXPXXFXPXFXPPXXPLXVXXPXPXXLPPXXPPXPXXSXXXXKXSPLLKPXRX 60
PP AP P P P P P P PP P K S P
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVP-------KPSVAAPPVPV 1135
Query: 59 XGGAPP 42
GAPP
Sbjct: 1136 PSGAPP 1141
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 1019 PAAXLPXPXPPPXPXPHPXLXR 954
PAA +P P PP PHP R
Sbjct: 325 PAAPVPTPAPPVKTSPHPASYR 346
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 8.3
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = -1
Query: 565 PSXPPTPPXXPXLSPPXXP 509
P PP PP P PP P
Sbjct: 6 PGNPPPPPPPPGFEPPSQP 24
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 8.3
Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 1/83 (1%)
Frame = -1
Query: 754 PPXAPGXAXPRRXPXSLXAGRRXPXXSAPXPRXXPXRVXRXXSLAXVFRPXPLPFXAXSR 575
PP AP P+ + R P + P P P + P P ++
Sbjct: 124 PPSAPAPPTPQ-------SELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQ 176
Query: 574 XXXP-SXPPTPPXXPXLSPPXXP 509
P PP+ P P PP P
Sbjct: 177 PAAPVKSPPSAPSLPSAVPPMPP 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,763,470
Number of Sequences: 5004
Number of extensions: 20092
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 784935310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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