Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_C21
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    35   0.013
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.1  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   6.0  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   7.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.9  

>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 35.1 bits (77), Expect = 0.013
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 148 SGRHVPTRARRQAGSFTVNSD-GTSGGRPERSLSPATTRTCS 270
           SG   P    R + S+++N   GTSGG+  R L+ A +RTCS
Sbjct: 193 SGNAPPFLRSRSSSSYSINKKKGTSGGQATRHLTYALSRTCS 234


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 443 NXPPXPXXPGFXXXETPPGPFPRAPILK 526
           N PP P  PGF     PP P P   + K
Sbjct: 8   NPPPPPPPPGFEPPSQPPPPPPPGYVKK 35



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +2

Query: 755 PPRGAXPPPXXSSXXXFFXXPXXPPXPPPXNXTK 856
           PP    PPP        F  P  PP PPP    K
Sbjct: 5   PPGNPPPPPPPPG----FEPPSQPPPPPPPGYVK 34


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = +1

Query: 184 AGSFTVNSDGTSGGRPERSLSPATTRTCSGAIGF 285
           AGS    S GT GG    S +PATT    G  GF
Sbjct: 135 AGSTGFGSQGTGGGLFGSSTTPATT-NAFGTSGF 167


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 169 RARRQAGSFTVNSDGTSGGRPERSLSPATT 258
           R+  QA +  V S  T GG P R  SPA T
Sbjct: 239 RSAAQAMATVVPSVSTPGGTPPRFASPALT 268


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 449 PPXPXXPGFXXXETPPGPFPRAPILKXGG 535
           PP P  PG      PP P P  P +  GG
Sbjct: 762 PPPPPPPGVAGAGPPPPP-PPPPAVSAGG 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,260,098
Number of Sequences: 5004
Number of extensions: 32292
Number of successful extensions: 56
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)