Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_C19
         (1045 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   6.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect(2) = 2.3
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 945  PPPPPP 962
            PPPPPP
Sbjct: 1859 PPPPPP 1864



 Score = 20.6 bits (41), Expect(2) = 2.3
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 846  PXPPPPP 866
            P PPPPP
Sbjct: 1857 PEPPPPP 1863


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 772  PPPPPPP 792
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 772  PPPPPPP 792
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 851  PPPPPXPP 874
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362



 Score = 21.0 bits (42), Expect(2) = 2.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 762  KKXPPPPPXP 791
            ++ PPPPP P
Sbjct: 1352 QQQPPPPPPP 1361



 Score = 20.6 bits (41), Expect(2) = 2.4
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 846  PXPPPPP 866
            P PPPPP
Sbjct: 1356 PPPPPPP 1362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 165 PKTPQXGV*PRPRXGXPXG 221
           P+ PQ G  P P  G P G
Sbjct: 31  PQAPQRGSPPNPSQGPPPG 49


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 933 PPXXPPPPPP 962
           PP   PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 6.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 933 PPXXPPPPPP 962
           P   PPPPPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 763 KXXPPPPPP 789
           K  PPPPPP
Sbjct: 340 KPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,083
Number of Sequences: 438
Number of extensions: 7389
Number of successful extensions: 39
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 34704288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)