Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_C15
(865 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC026179-1|AAH26179.1| 418|Homo sapiens SEC61A2 protein protein. 360 3e-99
AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2 prot... 360 3e-99
AK022640-1|BAB14148.1| 437|Homo sapiens protein ( Homo sapiens ... 356 7e-98
AF346602-1|AAK29083.1| 476|Homo sapiens Sec61 alpha form 1 prot... 354 3e-97
AF084458-1|AAD39847.1| 476|Homo sapiens sec61 homolog protein. 354 3e-97
AK074928-1|BAC11298.1| 356|Homo sapiens protein ( Homo sapiens ... 116 8e-26
M76558-1|AAA58402.1| 2161|Homo sapiens calcium channel alpha-1D ... 33 1.0
M83566-1|AAA35629.1| 2181|Homo sapiens calcium channel alpha-1 s... 32 3.1
D43747-1|BAA07804.1| 2170|Homo sapiens voltage-dependent calcium... 32 3.1
AB209171-1|BAD92408.1| 1854|Homo sapiens calcium channel, voltag... 32 3.1
U57627-1|AAB03839.2| 901|Homo sapiens ocrl1 protein. 31 7.2
M88162-1|AAA59964.2| 968|Homo sapiens Lowe oculocerebrorenal sy... 31 7.2
BC130612-1|AAI30613.1| 893|Homo sapiens oculocerebrorenal syndr... 31 7.2
BC094726-1|AAH94726.1| 893|Homo sapiens oculocerebrorenal syndr... 31 7.2
AL662877-2|CAI41087.1| 893|Homo sapiens oculocerebrorenal syndr... 31 7.2
AL662877-1|CAI41088.1| 901|Homo sapiens oculocerebrorenal syndr... 31 7.2
AL138745-5|CAI42615.1| 893|Homo sapiens oculocerebrorenal syndr... 31 7.2
AL138745-4|CAI42616.1| 901|Homo sapiens oculocerebrorenal syndr... 31 7.2
AL022162-2|CAI95696.1| 893|Homo sapiens oculocerebrorenal syndr... 31 7.2
AL022162-1|CAI95695.1| 901|Homo sapiens oculocerebrorenal syndr... 31 7.2
>BC026179-1|AAH26179.1| 418|Homo sapiens SEC61A2 protein protein.
Length = 418
Score = 360 bits (886), Expect = 3e-99
Identities = 171/181 (94%), Positives = 180/181 (99%)
Frame = +1
Query: 169 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 348
MGIKFLEVIKPFC++LPEI KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 349 PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 528
PFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 529 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 708
M+IT+GQAIVYVMTGMYG+P+E+GAG+CLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 709 L 711
L
Sbjct: 181 L 181
Score = 46.0 bits (104), Expect = 2e-04
Identities = 24/36 (66%), Positives = 25/36 (69%)
Frame = +2
Query: 713 FIATNICETIVWKAFSPATGNPWVXAXNSKGAVIXL 820
FIATNICETIVWKAFSP T N +GAVI L
Sbjct: 182 FIATNICETIVWKAFSPTTINTG-RGTEFEGAVIAL 216
>AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2
protein.
Length = 476
Score = 360 bits (886), Expect = 3e-99
Identities = 171/181 (94%), Positives = 180/181 (99%)
Frame = +1
Query: 169 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 348
MGIKFLEVIKPFC++LPEI KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 349 PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 528
PFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 529 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 708
M+IT+GQAIVYVMTGMYG+P+E+GAG+CLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 709 L 711
L
Sbjct: 181 L 181
Score = 46.0 bits (104), Expect = 2e-04
Identities = 24/36 (66%), Positives = 25/36 (69%)
Frame = +2
Query: 713 FIATNICETIVWKAFSPATGNPWVXAXNSKGAVIXL 820
FIATNICETIVWKAFSP T N +GAVI L
Sbjct: 182 FIATNICETIVWKAFSPTTINTG-RGTEFEGAVIAL 216
>AK022640-1|BAB14148.1| 437|Homo sapiens protein ( Homo sapiens
cDNA FLJ12578 fis, clone NT2RM4001054, moderately
similar to Homo sapiens sec61 homolog mRNA. ).
Length = 437
Score = 356 bits (875), Expect = 7e-98
Identities = 169/181 (93%), Positives = 179/181 (98%)
Frame = +1
Query: 169 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 348
MGIKFLEVIKPFC++ PEI KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCAVPPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 349 PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 528
PFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 529 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 708
M+IT+GQAIVYV+TGMYG+P+E+GAG+CLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQAIVYVITGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 709 L 711
L
Sbjct: 181 L 181
Score = 46.0 bits (104), Expect = 2e-04
Identities = 24/36 (66%), Positives = 25/36 (69%)
Frame = +2
Query: 713 FIATNICETIVWKAFSPATGNPWVXAXNSKGAVIXL 820
FIATNICETIVWKAFSP T N +GAVI L
Sbjct: 182 FIATNICETIVWKAFSPTTINTG-RGTEFEGAVIAL 216
>AF346602-1|AAK29083.1| 476|Homo sapiens Sec61 alpha form 1
protein.
Length = 476
Score = 354 bits (870), Expect = 3e-97
Identities = 169/181 (93%), Positives = 177/181 (97%)
Frame = +1
Query: 169 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 348
M IKFLEVIKPFC ILPEI KPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 349 PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 528
PFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 529 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 708
M+IT+GQ+IVYVMTGMYG+PSE+GAG+CLLI IQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 709 L 711
L
Sbjct: 181 L 181
Score = 46.0 bits (104), Expect = 2e-04
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +2
Query: 713 FIATNICETIVWKAFSPATGNPWVXAXNSKGAVIXL 820
FIATNICETIVWKAFSP T N +GA+I L
Sbjct: 182 FIATNICETIVWKAFSPTTVNTG-RGMEFEGAIIAL 216
>AF084458-1|AAD39847.1| 476|Homo sapiens sec61 homolog protein.
Length = 476
Score = 354 bits (870), Expect = 3e-97
Identities = 169/181 (93%), Positives = 177/181 (97%)
Frame = +1
Query: 169 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 348
M IKFLEVIKPFC ILPEI KPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 349 PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 528
PFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 529 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 708
M+IT+GQ+IVYVMTGMYG+PSE+GAG+CLLI IQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 709 L 711
L
Sbjct: 181 L 181
Score = 46.0 bits (104), Expect = 2e-04
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +2
Query: 713 FIATNICETIVWKAFSPATGNPWVXAXNSKGAVIXL 820
FIATNICETIVWKAFSP T N +GA+I L
Sbjct: 182 FIATNICETIVWKAFSPTTVNTG-RGMEFEGAIIAL 216
>AK074928-1|BAC11298.1| 356|Homo sapiens protein ( Homo sapiens
cDNA FLJ90447 fis, clone NT2RP3001240, highly similar to
Canis familiaris sec61 homologue mRNA. ).
Length = 356
Score = 116 bits (280), Expect = 8e-26
Identities = 54/61 (88%), Positives = 60/61 (98%)
Frame = +1
Query: 529 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 708
M+IT+GQ+IVYVMTGMYG+PSE+GAG+CLLI IQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 1 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 60
Query: 709 L 711
L
Sbjct: 61 L 61
Score = 46.0 bits (104), Expect = 2e-04
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +2
Query: 713 FIATNICETIVWKAFSPATGNPWVXAXNSKGAVIXL 820
FIATNICETIVWKAFSP T N +GA+I L
Sbjct: 62 FIATNICETIVWKAFSPTTVNTG-RGMEFEGAIIAL 96
>M76558-1|AAA58402.1| 2161|Homo sapiens calcium channel alpha-1D
subunit protein.
Length = 2161
Score = 33.5 bits (73), Expect = 1.0
Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Frame = +1
Query: 373 LASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALF-NGAQKLFGMV-ITVG 546
+ S+ L+ L + I+ S L MQL G +T R+ F N Q L + I G
Sbjct: 647 MKSSASLLLLLFLFIIIFSLLGMQLFGGK--FNFDETQTKRSTFDNFPQALLTVFQILTG 704
Query: 547 Q---AIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLL 660
+ A++Y YG PS G VC+ II LF+ G +LL
Sbjct: 705 EDWNAVMYDGIMAYGGPSSSGMIVCIYFII-LFICGNYILL 744
>M83566-1|AAA35629.1| 2181|Homo sapiens calcium channel alpha-1
subunit protein.
Length = 2181
Score = 31.9 bits (69), Expect = 3.1
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Frame = +1
Query: 394 LMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALF-NGAQKLFGMV-ITVGQ---AIV 558
L+ L + I+ S L MQL G +T R+ F N Q L + I G+ A++
Sbjct: 674 LLLLFLFIIIFSLLGMQLFGGK--FNFDETQTKRSTFDNFPQALLTVFQILTGEDWNAVM 731
Query: 559 YVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLL 660
Y YG PS G VC+ II LF+ G +LL
Sbjct: 732 YDGIMAYGGPSSSGMIVCIYFII-LFICGNYILL 764
>D43747-1|BAA07804.1| 2170|Homo sapiens voltage-dependent calcium
channel alpha1 subunit, CACN4 protein.
Length = 2170
Score = 31.9 bits (69), Expect = 3.1
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Frame = +1
Query: 394 LMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALF-NGAQKLFGMV-ITVGQ---AIV 558
L+ L + I+ S L MQL G +T R+ F N Q L + I G+ A++
Sbjct: 665 LLLLFLFIIIFSLLGMQLFGGK--FNFDETQTKRSTFDNFPQALLTVFQILTGEDWNAVM 722
Query: 559 YVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLL 660
Y YG PS G VC+ II LF+ G +LL
Sbjct: 723 YDGIMAYGGPSSSGMIVCIYFII-LFICGNYILL 755
>AB209171-1|BAD92408.1| 1854|Homo sapiens calcium channel,
voltage-dependent, L type, alpha 1D subunit variant
protein.
Length = 1854
Score = 31.9 bits (69), Expect = 3.1
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Frame = +1
Query: 394 LMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALF-NGAQKLFGMV-ITVGQ---AIV 558
L+ L + I+ S L MQL G +T R+ F N Q L + I G+ A++
Sbjct: 347 LLLLFLFIIIFSLLGMQLFGGK--FNFDETQTKRSTFDNFPQALLTVFQILTGEDWNAVM 404
Query: 559 YVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLL 660
Y YG PS G VC+ II LF+ G +LL
Sbjct: 405 YDGIMAYGGPSSSGMIVCIYFII-LFICGNYILL 437
>U57627-1|AAB03839.2| 901|Homo sapiens ocrl1 protein.
Length = 901
Score = 30.7 bits (66), Expect = 7.2
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +3
Query: 246 SIPRESIMDSNH-----IIYFLSMLPDSLIWYNVIRQCRSLLLDP--CNSCIKQ 386
SIP E+I SNH ++ FL LP+ +I Y + ++C DP C I Q
Sbjct: 775 SIP-ETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQ 827
>M88162-1|AAA59964.2| 968|Homo sapiens Lowe oculocerebrorenal
syndrome protein protein.
Length = 968
Score = 30.7 bits (66), Expect = 7.2
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +3
Query: 246 SIPRESIMDSNH-----IIYFLSMLPDSLIWYNVIRQCRSLLLDP--CNSCIKQ 386
SIP E+I SNH ++ FL LP+ +I Y + ++C DP C I Q
Sbjct: 842 SIP-ETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQ 894
>BC130612-1|AAI30613.1| 893|Homo sapiens oculocerebrorenal syndrome
of Lowe protein.
Length = 893
Score = 30.7 bits (66), Expect = 7.2
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +3
Query: 246 SIPRESIMDSNH-----IIYFLSMLPDSLIWYNVIRQCRSLLLDP--CNSCIKQ 386
SIP E+I SNH ++ FL LP+ +I Y + ++C DP C I Q
Sbjct: 767 SIP-ETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQ 819
>BC094726-1|AAH94726.1| 893|Homo sapiens oculocerebrorenal syndrome
of Lowe protein.
Length = 893
Score = 30.7 bits (66), Expect = 7.2
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +3
Query: 246 SIPRESIMDSNH-----IIYFLSMLPDSLIWYNVIRQCRSLLLDP--CNSCIKQ 386
SIP E+I SNH ++ FL LP+ +I Y + ++C DP C I Q
Sbjct: 767 SIP-ETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQ 819
>AL662877-2|CAI41087.1| 893|Homo sapiens oculocerebrorenal syndrome
of Lowe protein.
Length = 893
Score = 30.7 bits (66), Expect = 7.2
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +3
Query: 246 SIPRESIMDSNH-----IIYFLSMLPDSLIWYNVIRQCRSLLLDP--CNSCIKQ 386
SIP E+I SNH ++ FL LP+ +I Y + ++C DP C I Q
Sbjct: 767 SIP-ETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQ 819
>AL662877-1|CAI41088.1| 901|Homo sapiens oculocerebrorenal syndrome
of Lowe protein.
Length = 901
Score = 30.7 bits (66), Expect = 7.2
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +3
Query: 246 SIPRESIMDSNH-----IIYFLSMLPDSLIWYNVIRQCRSLLLDP--CNSCIKQ 386
SIP E+I SNH ++ FL LP+ +I Y + ++C DP C I Q
Sbjct: 775 SIP-ETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQ 827
>AL138745-5|CAI42615.1| 893|Homo sapiens oculocerebrorenal syndrome
of Lowe protein.
Length = 893
Score = 30.7 bits (66), Expect = 7.2
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +3
Query: 246 SIPRESIMDSNH-----IIYFLSMLPDSLIWYNVIRQCRSLLLDP--CNSCIKQ 386
SIP E+I SNH ++ FL LP+ +I Y + ++C DP C I Q
Sbjct: 767 SIP-ETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQ 819
>AL138745-4|CAI42616.1| 901|Homo sapiens oculocerebrorenal syndrome
of Lowe protein.
Length = 901
Score = 30.7 bits (66), Expect = 7.2
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +3
Query: 246 SIPRESIMDSNH-----IIYFLSMLPDSLIWYNVIRQCRSLLLDP--CNSCIKQ 386
SIP E+I SNH ++ FL LP+ +I Y + ++C DP C I Q
Sbjct: 775 SIP-ETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQ 827
>AL022162-2|CAI95696.1| 893|Homo sapiens oculocerebrorenal syndrome
of Lowe protein.
Length = 893
Score = 30.7 bits (66), Expect = 7.2
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +3
Query: 246 SIPRESIMDSNH-----IIYFLSMLPDSLIWYNVIRQCRSLLLDP--CNSCIKQ 386
SIP E+I SNH ++ FL LP+ +I Y + ++C DP C I Q
Sbjct: 767 SIP-ETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQ 819
>AL022162-1|CAI95695.1| 901|Homo sapiens oculocerebrorenal syndrome
of Lowe protein.
Length = 901
Score = 30.7 bits (66), Expect = 7.2
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +3
Query: 246 SIPRESIMDSNH-----IIYFLSMLPDSLIWYNVIRQCRSLLLDP--CNSCIKQ 386
SIP E+I SNH ++ FL LP+ +I Y + ++C DP C I Q
Sbjct: 775 SIP-ETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQ 827
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,526,333
Number of Sequences: 237096
Number of extensions: 2989622
Number of successful extensions: 13796
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 13482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13790
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11039988564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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