Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_C14
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    26   5.8  
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||...    26   7.6  

>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
 Frame = +1

Query: 115 VQDVCVFLSKMKCVALSCVKTIEPDLFSDDDVYTES--TEYNCYESFNNIIVYPIKNCTC 288
           +QD  + L    C     V T   +     + Y E+   +  CYE+F+ ++   +     
Sbjct: 191 MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADE 250

Query: 289 RYAYVRKLMVSSYSKRSN*PMYRTVMLK 372
            +  V KL  S+YSK     +    MLK
Sbjct: 251 EWDLVLKLNYSTYSKEDAAFLRSLYMLK 278


>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 63  ATIQYLVGSVRVSKLQSGPGCVCLLK*DEMRCTKLCKDNRTGSIFGR*CIYGKY 224
           A ++   G  +VSKL    G   LL    MR        + GS + R  +YG +
Sbjct: 276 AVVEEWFGGYKVSKLMRQLGAGSLLNDLSMRMENFVVAEKNGSPYHRLALYGAH 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,109
Number of Sequences: 5004
Number of extensions: 41162
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)