Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_C14
         (839 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M76729-1|AAA59993.1| 1838|Homo sapiens pro-alpha-1 type V collag...    31   5.2  
D90279-1|BAA14323.1| 1838|Homo sapiens collagen alpha 1(V) chain...    31   5.2  
AL645768-1|CAI17261.1| 1838|Homo sapiens collagen type V alpha 1...    31   5.2  
AL603650-2|CAI39859.1| 1838|Homo sapiens collagen type V alpha 1...    31   5.2  
AL591890-1|CAI15483.1| 1838|Homo sapiens collagen type V alpha 1...    31   5.2  
AB209864-1|BAD93101.1| 1792|Homo sapiens Pro-alpha-1 type V coll...    31   5.2  
X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen pr...    30   9.1  
X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3 col...    30   9.1  
AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen...    30   9.1  
AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein.              30   9.1  

>M76729-1|AAA59993.1| 1838|Homo sapiens pro-alpha-1 type V collagen
           protein.
          Length = 1838

 Score = 31.1 bits (67), Expect = 5.2
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -3

Query: 828 KGPPXGXGXTGXPQPEXTRGPGSQGGXXXEXXP 730
           +GPP   G  G P P  T GP  Q G   E  P
Sbjct: 468 EGPPGPEGPAGLPGPPGTMGPTGQVGDPGERGP 500


>D90279-1|BAA14323.1| 1838|Homo sapiens collagen alpha 1(V) chain
           precursor protein.
          Length = 1838

 Score = 31.1 bits (67), Expect = 5.2
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -3

Query: 828 KGPPXGXGXTGXPQPEXTRGPGSQGGXXXEXXP 730
           +GPP   G  G P P  T GP  Q G   E  P
Sbjct: 468 EGPPGPEGPAGLPGPPGTMGPTGQVGDPGERGP 500


>AL645768-1|CAI17261.1| 1838|Homo sapiens collagen type V alpha 1
           protein.
          Length = 1838

 Score = 31.1 bits (67), Expect = 5.2
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -3

Query: 828 KGPPXGXGXTGXPQPEXTRGPGSQGGXXXEXXP 730
           +GPP   G  G P P  T GP  Q G   E  P
Sbjct: 468 EGPPGPEGPAGLPGPPGTMGPTGQVGDPGERGP 500


>AL603650-2|CAI39859.1| 1838|Homo sapiens collagen type V alpha 1
           protein.
          Length = 1838

 Score = 31.1 bits (67), Expect = 5.2
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -3

Query: 828 KGPPXGXGXTGXPQPEXTRGPGSQGGXXXEXXP 730
           +GPP   G  G P P  T GP  Q G   E  P
Sbjct: 468 EGPPGPEGPAGLPGPPGTMGPTGQVGDPGERGP 500


>AL591890-1|CAI15483.1| 1838|Homo sapiens collagen type V alpha 1
           protein.
          Length = 1838

 Score = 31.1 bits (67), Expect = 5.2
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -3

Query: 828 KGPPXGXGXTGXPQPEXTRGPGSQGGXXXEXXP 730
           +GPP   G  G P P  T GP  Q G   E  P
Sbjct: 468 EGPPGPEGPAGLPGPPGTMGPTGQVGDPGERGP 500


>AB209864-1|BAD93101.1| 1792|Homo sapiens Pro-alpha-1 type V
           collagen variant protein.
          Length = 1792

 Score = 31.1 bits (67), Expect = 5.2
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -3

Query: 828 KGPPXGXGXTGXPQPEXTRGPGSQGGXXXEXXP 730
           +GPP   G  G P P  T GP  Q G   E  P
Sbjct: 422 EGPPGPEGPAGLPGPPGTMGPTGQVGDPGERGP 454


>X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen
           protein.
          Length = 1078

 Score = 30.3 bits (65), Expect = 9.1
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -3

Query: 825 GPPXGXGXTGXPQPEXTRGP-GSQGGXXXEXXP 730
           GPP G G  G P P+  +G  GS GG      P
Sbjct: 696 GPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFP 728


>X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3
           collagen protein.
          Length = 1466

 Score = 30.3 bits (65), Expect = 9.1
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -3

Query: 825 GPPXGXGXTGXPQPEXTRGP-GSQGGXXXEXXP 730
           GPP G G  G P P+  +G  GS GG      P
Sbjct: 843 GPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFP 875


>AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen
           alpha 1 chain protein.
          Length = 1466

 Score = 30.3 bits (65), Expect = 9.1
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -3

Query: 825 GPPXGXGXTGXPQPEXTRGP-GSQGGXXXEXXP 730
           GPP G G  G P P+  +G  GS GG      P
Sbjct: 843 GPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFP 875


>AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein.
          Length = 1466

 Score = 30.3 bits (65), Expect = 9.1
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -3

Query: 825 GPPXGXGXTGXPQPEXTRGP-GSQGGXXXEXXP 730
           GPP G G  G P P+  +G  GS GG      P
Sbjct: 843 GPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFP 875


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,972,313
Number of Sequences: 237096
Number of extensions: 1737009
Number of successful extensions: 6978
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6934
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10593928420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)