Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_C12
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    30   0.51 
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    27   4.7  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    26   6.2  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    26   8.2  

>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 621 YLFYYPIQLKFGPLPSEYSL 680
           +L+Y+ I LKFG LP  Y+L
Sbjct: 350 HLYYFSIYLKFGQLPERYNL 369


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 95  FRGHTPKCHMVSVEISSH 148
           FR HTPK   + +E+SSH
Sbjct: 655 FRFHTPKIQSLLIELSSH 672


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 305 NQILPRHSDCGIIVICKW*PLNDFMCILSS 216
           NQ++  H  CG+ V  +W   N+F+    S
Sbjct: 654 NQVVSLHPSCGLSVTPEWVVYNEFVLTTKS 683


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -2

Query: 526 IAQYNIQSIHRKKPLLSKFLAEQNVDICLLNETWLKDTQHFKIS 395
           + QY +QS  R + + SKFL   N +  L++E  L + ++ K +
Sbjct: 454 VTQY-VQSRGRARAMASKFLIFLNTEELLIHERILHEEKNLKFA 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,303,348
Number of Sequences: 5004
Number of extensions: 64230
Number of successful extensions: 172
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)