Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_C12
         (887 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK092314-1|BAC03861.1|  148|Homo sapiens protein ( Homo sapiens ...    54   7e-07
AK131313-1|BAD18477.1|  244|Homo sapiens protein ( Homo sapiens ...    48   3e-05
AY436641-1|AAS79823.1|  204|Homo sapiens putative exonuclease pr...    37   0.085
AK131256-1|BAD18435.1|  177|Homo sapiens protein ( Homo sapiens ...    32   2.4  
AB209519-1|BAD92756.1|  243|Homo sapiens eukaryotic translation ...    31   4.2  

>AK092314-1|BAC03861.1|  148|Homo sapiens protein ( Homo sapiens
           cDNA FLJ34995 fis, clone OCBBF2011311. ).
          Length = 148

 Score = 54.0 bits (124), Expect = 7e-07
 Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 5/126 (3%)
 Frame = -2

Query: 493 KKPLLSKFLAEQNVDICLLNETWL--KDTQHFKISGYNSHYH-NAQNEHGGVAILIKPYF 323
           K+  ++ ++  Q++ +C + ET L  KDT   KI G+   Y  N + +   VAIL+    
Sbjct: 5   KRHRMASWIKSQDLSVCCIQETHLICKDTYRLKIKGWQKIYQTNGKQKKAEVAILVSDKT 64

Query: 322 KYNIIQTRFYQDIQTVALSLYVSGNHLTILCVYCPPSNGSFRISK--LRNIIRDLPKPIY 149
            +   + + +++   + +   +    LTIL +Y  P+ G+ R+ K  LR+  RDL     
Sbjct: 65  DFKPTKIKKHKEGHYIMVKDSIQQEELTILNIYA-PNTGAPRLIKQVLRDRQRDLDSHTI 123

Query: 148 VAGDFN 131
             GDFN
Sbjct: 124 TVGDFN 129


>AK131313-1|BAD18477.1|  244|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16301 fis, clone PLACE7000333. ).
          Length = 244

 Score = 48.4 bits (110), Expect = 3e-05
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 5/122 (4%)
 Frame = -2

Query: 481 LSKFLAEQNVDICLLNETWL--KDTQHFKISGYNSHYH-NAQNEHGGVAILIKPYFKYNI 311
           L+ ++  Q+  +C + ET L  K T  F I G+   Y  N + +  GVAIL+    K + 
Sbjct: 27  LANWIKSQDPSVCCIQETHLMRKFTHRFNIKGWRKIYQENGKQKKAGVAILVSD--KTDF 84

Query: 310 IQTRFYQDI-QTVALSLYVSGNHLTILCVYCPPSNGSFRISK-LRNIIRDLPKPIYVAGD 137
             T+   D    + +   +    LTIL +Y P +     I + LR++ RDL     + GD
Sbjct: 85  KPTKIKGDKGHYIMVKGSMQQEELTILNIYAPNTRAPRFIKQVLRDLQRDLDSHTIIMGD 144

Query: 136 FN 131
           FN
Sbjct: 145 FN 146


>AY436641-1|AAS79823.1|  204|Homo sapiens putative exonuclease
           protein.
          Length = 204

 Score = 37.1 bits (82), Expect = 0.085
 Identities = 31/146 (21%), Positives = 65/146 (44%), Gaps = 2/146 (1%)
 Frame = -2

Query: 562 MDSTVQNIQQLCIAQYNIQSIHRKKPLLSKFLAEQNVDICLLNETWLKDTQHFKISGYNS 383
           M+  V +I  + +   N Q+   K+  +++++      +C L ET     QH +  G+  
Sbjct: 1   MNRIVPHIS-IVMLNVNGQNAPLKRYRMAEWIRIHQPSVCCLQET-----QHIR-KGWKK 53

Query: 382 HYH-NAQNEHGGVAILIKPYFKYNIIQTRFYQDIQTVALSLYVSGNHLTILCVYCPPSNG 206
            +H N   + GG+AI I     +     +  ++   + +   V   ++T+L ++ P +  
Sbjct: 54  IFHANGHQKQGGIAIHISDKTNFKATAVKKDKEGNYIMIKGLVQQENITVLNIHTPNTGA 113

Query: 205 S-FRISKLRNIIRDLPKPIYVAGDFN 131
           S F    L ++  ++     + GDFN
Sbjct: 114 STFTKQLLLDLRNEIDGNTVILGDFN 139


>AK131256-1|BAD18435.1|  177|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16187 fis, clone BRTHA2010033. ).
          Length = 177

 Score = 32.3 bits (70), Expect = 2.4
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
 Frame = -2

Query: 352 GVAILI--KPYFKYNIIQTRFYQDIQTVALSLYVSGNHLTILCVYCPPSNGSFRISK-LR 182
           G+AIL+  KP FK   I+    ++   + +   +    LTIL +Y P +     I + LR
Sbjct: 16  GLAILVSDKPDFKPTKIKRD--KEGHYIVVKGSIHQEDLTILNIYAPNTGAPRSIKQVLR 73

Query: 181 NIIRDLPKPIYVAGDFN 131
           ++ RDL     + GDFN
Sbjct: 74  DLRRDLDSHTIIMGDFN 90


>AB209519-1|BAD92756.1|  243|Homo sapiens eukaryotic translation
           initiation factor 4E member 2 variant protein.
          Length = 243

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
 Frame = -3

Query: 654 QTLVELGNKTDNEPVTTLXIKDLLXK--NLSH*WIVQYRTYSSYVSLNTIFK 505
           + ++ + NKT ++  TT  I+D L +  NL    I++Y+T++  +  N+ F+
Sbjct: 186 EDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSIKDNSSFR 237


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,599,551
Number of Sequences: 237096
Number of extensions: 2154645
Number of successful extensions: 7086
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7086
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)