Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_C12
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ...    38   0.007
Z72508-1|CAA96641.1|  342|Caenorhabditis elegans Hypothetical pr...    31   1.5  
U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF036702-7|AAB88372.1|  360|Caenorhabditis elegans Hypothetical ...    29   5.9  
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
           protein Y113G7B.12 protein.
          Length = 1042

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
 Frame = -2

Query: 373 NAQNEHGGVAILIKP---YFKYNIIQTRFYQDIQTVALSLYV-----SGNHLTILCVYCP 218
           + +N  GGVAIL KP     K +I Q   Y   Q+  L+  V      G    ++ VY P
Sbjct: 434 HTKNSGGGVAILFKPPLVVTKLDIQQEHHYNGHQSEVLACRVLNPDYPGASFNLVVVYRP 493

Query: 217 PSNGSFRISKL-RNIIRDLPKPIYV-AGDFNAHHV-AFGCMTTKSRGHQVIRF 68
           P NG  +IS+L  ++   LP   YV  GDFN   +   G  +  S+ H+ ++F
Sbjct: 494 PING--KISQLIAHLSSFLPSSEYVLMGDFNFKEMYEKGSYSVNSK-HEFMKF 543


>Z72508-1|CAA96641.1|  342|Caenorhabditis elegans Hypothetical
           protein F28H7.1 protein.
          Length = 342

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 496 YVYFEYCIERYITAVCSVLYYPLM*QIFXK*VFYXQCSHRFIICFITQFN 645
           Y+ F +CI   I+AVCSVL  P    I          ++R+++ +   FN
Sbjct: 2   YINFAHCIIPKISAVCSVLVNPFTVYIVWNDKKLQLGNYRYLLLYFALFN 51


>U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical protein
            ZC53.4 protein.
          Length = 1410

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -2

Query: 355  GGVAILIKPYFKYNIIQTRFYQDIQTVALSLYVSGNHL--TILCVYCPPSNGSFRISKLR 182
            GG+   +K Y K N   T+ + + Q     LY+  N+L    +C   P  +  F    L 
Sbjct: 1176 GGIVNAVKRYSKVNNKYTKNFNEKQLTNFLLYLDANNLYGWAMCQMLPTGDFKFETQSLI 1235

Query: 181  NII 173
            +I+
Sbjct: 1236 SIL 1238


>AF036702-7|AAB88372.1|  360|Caenorhabditis elegans Hypothetical
           protein F33D4.4 protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 85  DPDFSWSYTQMPHGER 132
           + DFSW+YT+ PH  R
Sbjct: 8   EEDFSWAYTEEPHASR 23


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = -2

Query: 229 VYCPPSNGSFRISKLR----NIIRDLPKPIYVAGDFNAHHVAF 113
           VY PP + S   ++L     NI +   K I ++GD NAHH A+
Sbjct: 6   VYVPPRSSSSNHARLMTDFSNIFQTKSKSI-ISGDVNAHHSAW 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,037,768
Number of Sequences: 27780
Number of extensions: 352538
Number of successful extensions: 715
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)