Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_C12
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.5  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   8.6  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 427 WLKDTQHFKISGYNSHYHNAQNEHGGVAILIKP 329
           WL  T HFK     S +HNA+     +++L  P
Sbjct: 513 WL--TLHFKDPKVESAFHNAEEAFSPLSLLGGP 543


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -2

Query: 319 YNIIQTRFYQDIQTVALSLYVSGNHLTILCVYCPPSNGSFRISKLRNIIRDL 164
           YNI+  R Y    T  ++L +    +T++ ++  PS+    I    N I  L
Sbjct: 235 YNILLRRHYSMNSTTYVTLTIVLMTMTLMTLWLEPSSTERMIIANLNFILHL 286


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/55 (18%), Positives = 26/55 (47%)
 Frame = -2

Query: 520 QYNIQSIHRKKPLLSKFLAEQNVDICLLNETWLKDTQHFKISGYNSHYHNAQNEH 356
           +Y  +S  R +    +  + +   I  L+   + +  ++  + YN++Y+N  N +
Sbjct: 291 KYRERSKERSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNN 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,410
Number of Sequences: 438
Number of extensions: 5101
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)