Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_C11
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0025 - 244068-244177,244279-244333,244500-244527,244621-24...    32   0.53 
11_04_0051 + 12863978-12864476,12864575-12864674,12865567-128656...    31   1.6  
09_03_0156 - 12844549-12845138,12845237-12845723                       31   1.6  
04_03_0513 - 16681227-16683936,16685572-16685966                       29   3.7  
12_02_0145 - 14381089-14381154,14381351-14381494,14384678-14385547     29   4.9  
05_04_0191 + 18927302-18927707,18928747-18928979,18929062-189291...    28   8.6  

>06_01_0025 -
           244068-244177,244279-244333,244500-244527,244621-244691,
           244829-244926,245069-245186,245573-245636,245744-245808,
           245893-245928,246255-246311,246422-246691
          Length = 323

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
 Frame = +2

Query: 659 IKENEQFVMYAN---YSNSLTYPN--NEDRIAYLTEDVGLNAYYYYFHSHLPSWWNSGNT 823
           +K  +  V Y N   Y N   + N    D IA ++ + GL   + + H      WNSGNT
Sbjct: 210 VKYQDNEVPYLNELEYINGEVWANVWQTDCIARVSHEDGLVVGWIFLHELRQHLWNSGNT 269

Query: 824 ELXXXRG 844
           E+    G
Sbjct: 270 EIDVLNG 276


>11_04_0051 +
           12863978-12864476,12864575-12864674,12865567-12865657,
           12866114-12866176,12866364-12866549,12866994-12867024,
           12867054-12867502
          Length = 472

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 632 EKICYNYGIIKENEQFVMYANYSNSLTYPNNEDRIAYLTEDVGLNAYYYYF 784
           E+    + + + N +F+   N    LTY   E+  A LTE+  L  Y  Y+
Sbjct: 66  EEALQRFDVYRRNAEFIDAVNLRGDLTYQLAENEFADLTEEEFLATYTGYY 116


>09_03_0156 - 12844549-12845138,12845237-12845723
          Length = 358

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 632 EKICYNYGIIKENEQFVMYANYSNSLTYPNNEDRIAYLTEDVGLNAYYYYF 784
           E+    + + + N +F+   N    LTY   E+  A LTE+  L  Y  Y+
Sbjct: 62  EEALQRFDVYRRNAEFIDAVNLRGDLTYQLAENEFADLTEEEFLATYTGYY 112


>04_03_0513 - 16681227-16683936,16685572-16685966
          Length = 1034

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +3

Query: 264  QQGLLHKHESLRKFHDDVQGRIPSQEFGILDLL 362
            Q G+LH+ ESL    +D+ G IP QE   LD L
Sbjct: 905  QLGMLHQLESLDLSSNDLSGEIP-QELASLDFL 936


>12_02_0145 - 14381089-14381154,14381351-14381494,14384678-14385547
          Length = 359

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 180 LLLLFDERSVNRCRFEFRYGATESEGNKPR*NQDSLHG-LSRRSELSNLKEFPIV 19
           L LL    ++   +F  +  ATESEG      +  LHG + R+  L N  + P+V
Sbjct: 33  LPLLRKGANLEHAKFLHQIAATESEGGLAEQGEAGLHGTIDRQPRLHNGSDDPVV 87


>05_04_0191 +
           18927302-18927707,18928747-18928979,18929062-18929127,
           18929262-18929340,18929935-18930014,18930099-18930122,
           18930254-18930375,18930902-18931109,18931960-18932006,
           18932914-18932998,18933292-18933355,18933488-18933609
          Length = 511

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 629 DEKICYNYGIIKENEQFVM 685
           DE +C+ YG ++ENE +++
Sbjct: 459 DEVLCWLYGTVRENEDYIL 477


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,444,574
Number of Sequences: 37544
Number of extensions: 401999
Number of successful extensions: 959
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)