Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_C10
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    31   0.16 
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    30   0.50 
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    30   0.50 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    29   0.66 
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    28   2.0  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    26   6.1  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    26   8.1  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   8.1  

>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +1

Query: 631 VGKWSPDPKTNSAWKXQYN-KLCSMCEHPERCDYPD-EFSGYVGA--LKCLAHNNGQVAF 798
           V  +  DPK+  ++K  Y   L S+      C+  D EF+  V    L+ L  NN +   
Sbjct: 372 VYNYQEDPKSTLSFKKNYTPNLSSLKLCMVECEVVDPEFNIIVSDRWLQPLGTNNSKEVI 431

Query: 799 TKVIFTRKFFGLPV 840
           T ++  RKF G+P+
Sbjct: 432 TPILCLRKFGGIPI 445


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = +1

Query: 760 LKCLAHNNGQVAFTKVIFTR-KFFG---LPVGTLQRVLQ 864
           LKC+ H  GQV   KVI  R KF G   + VG L+R+ +
Sbjct: 533 LKCIDHKRGQVVAIKVIKNRQKFHGQTLVEVGILKRLCE 571


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +3

Query: 165 PSQHLKACQDMVDIPTKSKVTLDCIPARDRMECLNYVQQRQADFVPVD 308
           P   L+A Q+++D    S++    I   + ++   YVQ+++ DF PVD
Sbjct: 230 PGNKLEAIQNVIDSLHISRIE---IRTENSIDISQYVQKKEVDFFPVD 274


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +2

Query: 683 TTSYALCANIQRDATIPTNSAATWAH*SVSLTTTDKSPSPKSYSPGNSSDCPSVHSSES 859
           T +  L   +   +   T S+++ +  S S TTT  SPS  S S  +SS   S  SS S
Sbjct: 118 TGNGVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSS 176


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 289 PISFQLTPKTCTWPPKYPIRTSSFSRSTEPMKN 387
           P+  Q  P+   +PP YPI   S+   T P  N
Sbjct: 736 PVVSQQQPQPYAFPPMYPIPYVSYGYGTMPYNN 768


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 643 SPDPKTNSAWKXQYNKLCSMCEHPE 717
           +PDPKT S    +YN  C   +HPE
Sbjct: 90  TPDPKTESPSFVKYNAHCD--DHPE 112


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +1

Query: 289 PISFQLTPKTCTWPPKYPIRTSSFSRSTEPMKNRMRLSVTKQ 414
           P  + LT  TC      PI+++   ++ E + N  ++S   Q
Sbjct: 266 PSGYPLTSSTCVSSISQPIQSTDCQKAQENLSNNKQMSSNDQ 307


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 328 PPKYPIRTSSFSRSTEPMKN 387
           PPK P+R  S  RS+ P++N
Sbjct: 306 PPKPPLRKVSTQRSSSPIEN 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,765,314
Number of Sequences: 5004
Number of extensions: 83053
Number of successful extensions: 241
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)