Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_C10
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0353 - 22602134-22602373,22602854-22603228                       32   0.69 
11_03_0097 + 9967351-9967969,9968180-9968259                           30   2.1  
01_06_1674 + 39072861-39073260,39073288-39073358,39073659-390737...    30   2.8  
12_01_0779 + 7129879-7130398,7130585-7130664                           29   3.7  
05_06_0120 + 25748882-25749297,25749411-25749600,25749682-257498...    29   4.9  

>11_06_0353 - 22602134-22602373,22602854-22603228
          Length = 204

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +2

Query: 650 IRKQTRLGRXNTTSYALCA-NIQRDATIPTNSAATWAH*SVSLTTTDKSPSPKSYSPGNS 826
           +R +  + R    + AL A +IQ +   PT SA      +    T+D  P P   SP N 
Sbjct: 48  VRIENNIARTMEDNLALAAPHIQSEKRAPTTSALQKIPKAAKPMTSDNGPVPMRKSPPND 107

Query: 827 SDCPSVHSS 853
           +   S+H +
Sbjct: 108 NTWCSIHET 116


>11_03_0097 + 9967351-9967969,9968180-9968259
          Length = 232

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 17  LTIGNP*DLSSDHLTELVGCLDNGSKIFHFDNPDLC 124
           L +G    L+ D L EL GC+D G    + + P+LC
Sbjct: 123 LGVGRARSLTDDDLEELKGCVDLGFGFSYDEIPELC 158


>01_06_1674 +
           39072861-39073260,39073288-39073358,39073659-39073716,
           39074604-39074659,39075179-39075400
          Length = 268

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 23  IGNP*DLSSDHLTELVGCLDNGSKIFHFDNPDLC 124
           +G    L+ + L EL GCLD G    + + P+LC
Sbjct: 57  VGRTRSLTEEDLEELKGCLDLGFGFAYHEIPELC 90


>12_01_0779 + 7129879-7130398,7130585-7130664
          Length = 199

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 23  IGNP*DLSSDHLTELVGCLDNGSKIFHFDNPDLC 124
           +G    L+ D L EL GC+D G    + + P+LC
Sbjct: 93  VGRARSLTDDDLEELKGCVDLGFGFSYDEIPELC 126


>05_06_0120 +
           25748882-25749297,25749411-25749600,25749682-25749888,
           25750234-25750401,25751155-25751390,25751617-25751764
          Length = 454

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +1

Query: 274 FSRGKPI-SFQLTPKTCTWP 330
           +SRGKP+ S  L P++C WP
Sbjct: 273 YSRGKPLLSATLAPRSCDWP 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,443,990
Number of Sequences: 37544
Number of extensions: 549058
Number of successful extensions: 1390
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)