Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_C07
(865 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.017
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.6
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.4
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 27 3.4
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 27 4.5
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 4.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 6.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.0
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 7.9
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.7 bits (76), Expect = 0.017
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +2
Query: 701 PFLPSGXPGR--LPHTSPLVXISXPGGRXLPPPXXPXXAPNPPPXXPXPXPLYP 856
P LP G P LP ++P+ P G PP P AP PPP P P P P
Sbjct: 437 PSLPMGAPAAPPLPPSAPIAP-PLPAGMPAAPP-LPPAAPAPPP-APAPAPAAP 487
Score = 29.1 bits (62), Expect = 0.85
Identities = 27/111 (24%), Positives = 33/111 (29%), Gaps = 7/111 (6%)
Frame = +2
Query: 545 PPERASQKSTLTSEVAKPDRTIXIPGVSPLESSXXXXXXXXXXXXXXXXXSRPFLPSGXP 724
PP +S + P + P P S+ + P P P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Query: 725 GR-LPHTSPLVXISX------PGGRXLPPPXXPXXAPNPPPXXPXPXPLYP 856
GR P PL S P LPP P P+ PP P P P
Sbjct: 397 GRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447
Score = 28.3 bits (60), Expect = 1.5
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Frame = +2
Query: 701 PFLPSGXPGRLPHTSPLVXISXPGGRXLPPPXXP--XXAPNPPPXXPXPXPLYP 856
P LP P LP ++P S P G PP P AP P P PL P
Sbjct: 421 PSLPPSAPPSLPPSAPP---SLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +2
Query: 761 SXPGGRXLPPPXXPXXAPNPPPXXPXPXPLYPGY 862
S P G PPP P PP P P P PGY
Sbjct: 3 SLPPGN--PPPPPPPPGFEPPSQPPPPPP--PGY 32
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +2
Query: 707 LPSGXPGRLPHTSPLVXISXPGGRXLPPPXXPXXAPNPPPXXPXPXPLYPG 859
+P+ P +P P + GG PPP PPP P P + G
Sbjct: 741 VPTPAPAPIPVPPPAPIM---GGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/36 (30%), Positives = 13/36 (36%)
Frame = +2
Query: 734 PHTSPLVXISXPGGRXLPPPXXPXXAPNPPPXXPXP 841
P P V + P +P P PPP P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +2
Query: 698 RPFLPSGXPGRLPHTSPLVXISXPGGRXLPPPXXPXXAPNPPPXXP 835
RP +P P P P+ + P LPPP P PP P
Sbjct: 146 RPSIPPPSPASAP---PIPSKAPPIPSSLPPPAQPAAPVKSPPSAP 188
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +3
Query: 441 RIRGITQERTCEQKASKRPGTVXRPRCWRFSIGSAPLNEHHKNRRSRQRWRNPT 602
R+ E T + S G+ PR RF++G+ + + N Q + N T
Sbjct: 511 RVTSRMSEHTGNRVVSFPRGSAFNPRVTRFNVGNEQFSNNIDNNNYNQPYANAT 564
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 770 GGRXLPPPXXPXXAPNPPPXXPXPXPLY 853
G + +P P P PPP P P P+Y
Sbjct: 342 GNQVMPTPQVQGSRPPPPP--PMPAPIY 367
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -2
Query: 858 PG*RGQGXGXXGGGXGAXQGXXGGGRXLPPG 766
PG G G G GGG G G GG P G
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +1
Query: 781 PSPPXXALXXPXPPPXXPXPLXPLS 855
P+PP + P PP P P P S
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPS 1729
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 6.0
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +3
Query: 630 PWKAPLV-PLSWSPTLPLYRI-PCPALSS 710
P APL P+S SP PL R+ P P LSS
Sbjct: 991 PPSAPLSKPVSTSPAAPLARVPPVPKLSS 1019
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 848 GXRGXGXKGGGXGXXRAXXGGEG 780
G RG G +GGG G R GG G
Sbjct: 30 GGRG-GARGGGRGGARGGRGGRG 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,835
Number of Sequences: 5004
Number of extensions: 52786
Number of successful extensions: 206
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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