Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_C07
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    26   0.52 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   4.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   8.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   8.4  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 475 SHVLSCVIPLILWITVLPPLSELIPLAA 392
           S +LS V+ L+L   +LPP S ++PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 496 GLLLAFCSHVL-SCVIPLILWITVLPPLSELIPL 398
           G  ++ CS +L S  +  +L   ++PP S  IPL
Sbjct: 278 GEKVSLCSSILLSLTVFFLLLAEIIPPTSLAIPL 311


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +2

Query: 698  RPFLPSGXPGRLPHTSPLVXISXPGGRXLPP-PXXPXXAPNPPPXXPXP 841
            +P  P   PG +P  + +   S   G  +P  P  P    NPPP  P P
Sbjct: 1127 KPQKPFTSPGGIPGPNGIKMPSFMEG--MPHLPFTPFNFWNPPPFMPSP 1173


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 677 RQGRGPGERHEGSFPGGKRLVXL*SCRVS 591
           R+  GPG +    FP   R   L  C++S
Sbjct: 55  RRNPGPGSKGPRDFPRSHRFKSLPRCQLS 83


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 475 SHVLSCVIPLILWITVLPPLSELIPL 398
           S +LS  +  +L   ++PP S ++PL
Sbjct: 277 SILLSLTVFFLLLAEIIPPTSLVVPL 302


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 570 DFCDARSGGRSLWKN 526
           D C   SGG  LW+N
Sbjct: 343 DACQMDSGGPVLWQN 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,746
Number of Sequences: 438
Number of extensions: 5363
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)