Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_C06
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   0.66 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.69 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.1  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 473 PPPPXPPPXXPPXXXP 520
           PP P PPP  P    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 467 PPPPPPXPPP 496
           PP P P PPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.6 bits (46), Expect(2) = 0.66
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 467 PPPPPPXPPP 496
           P P PP PPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 664 PPPPPPPXXPP 696
           PP P PP  PP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 673 PPPPXXPPXPP 705
           PP P  PP PP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 664 PPPPPPPXXPP 696
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353



 Score = 21.0 bits (42), Expect(2) = 0.66
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 470 PPPPPXPPPXXPP 508
           P PPP PP    P
Sbjct: 341 PAPPPPPPSSSGP 353


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 467 PPPPPPXPPPXXPPXXXP 520
           PP P   PPP  PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 757 PPPXXXPXPPXPPXXPPS 810
           P P   P P  PP  PPS
Sbjct: 40  PNPSQGPPPGGPPGAPPS 57



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 476 PPPXPPPXXPPXXXP 520
           PPP  PP  PP   P
Sbjct: 46  PPPGGPPGAPPSQNP 60


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 664  PPPPPPP 684
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 664  PPPPPPP 684
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 467  PPPPPPXP 490
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 470  PPPPPXPP 493
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 473  PPPPXPPP 496
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,683
Number of Sequences: 438
Number of extensions: 9012
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)