Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_C03
         (869 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z97634-12|CAI95599.1|  195|Homo sapiens non-metastatic cells 4, ...    34   0.77 
X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage f...    32   2.3  
X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.               32   2.3  
BC005000-1|AAH05000.1|  478|Homo sapiens CPSF6 protein protein.        32   2.3  
BC000714-1|AAH00714.1|  588|Homo sapiens CPSF6 protein protein.        32   2.3  
AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and polyadenyl...    32   2.3  

>Z97634-12|CAI95599.1|  195|Homo sapiens non-metastatic cells 4,
           protein expressed in protein.
          Length = 195

 Score = 33.9 bits (74), Expect = 0.77
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -3

Query: 276 GPRSPDPL*RCRHGCSCPFFQFS*RSSTWAREQRWSCSKPAPERRRRIGSL 124
           GPR+P P    RHG   P      R  +W RE+     KP   +RR +G +
Sbjct: 16  GPRAPGPSLLVRHGSGLPPSALK-RGPSWTRERTLVAVKPDGVQRRLVGDV 65


>X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage
           factor I 68 kDa subunit protein.
          Length = 551

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +3

Query: 720 PXPXXGPPPXXXXNPXXXPXPXAXPLXFSPXP 815
           P P  GPPP     P   P P   PL  +P P
Sbjct: 310 PPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPP 341


>X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.
          Length = 551

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +3

Query: 720 PXPXXGPPPXXXXNPXXXPXPXAXPLXFSPXP 815
           P P  GPPP     P   P P   PL  +P P
Sbjct: 310 PPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPP 341


>BC005000-1|AAH05000.1|  478|Homo sapiens CPSF6 protein protein.
          Length = 478

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +3

Query: 720 PXPXXGPPPXXXXNPXXXPXPXAXPLXFSPXP 815
           P P  GPPP     P   P P   PL  +P P
Sbjct: 237 PPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPP 268


>BC000714-1|AAH00714.1|  588|Homo sapiens CPSF6 protein protein.
          Length = 588

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +3

Query: 720 PXPXXGPPPXXXXNPXXXPXPXAXPLXFSPXP 815
           P P  GPPP     P   P P   PL  +P P
Sbjct: 347 PPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPP 378


>AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and
           polyadenylation specific factor 6, 68 kD subunit variant
           protein.
          Length = 551

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +3

Query: 720 PXPXXGPPPXXXXNPXXXPXPXAXPLXFSPXP 815
           P P  GPPP     P   P P   PL  +P P
Sbjct: 310 PPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPP 341


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,781,135
Number of Sequences: 237096
Number of extensions: 1587864
Number of successful extensions: 3167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3062
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11048563978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)