Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_C01
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.042
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.69 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.69 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 0.042
 Identities = 16/47 (34%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
 Frame = +3

Query: 666 PXPPPPXPPPPXXPXPGGPPPFXXGGXXGXPP-PPPKXXPPXXXXPP 803
           P P P     P  P  G PP    G   G PP  PP   P      P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 26.6 bits (56), Expect = 0.30
 Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
 Frame = +3

Query: 756 PPPPPKXXP--PXXXXPPXXXPXXPPPPXPXPXPPPPPXP 869
           P P P   P  P    PP   P   PPP   P  PP   P
Sbjct: 23  PQPSPHQSPQAPQRGSPPN--PSQGPPPGGPPGAPPSQNP 60



 Score = 25.0 bits (52), Expect = 0.91
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +3

Query: 642 PXPXXXXXPXPPPPXPPPPXXPXPGGPPPFXXGGXXGXPP 761
           P P       P  P    P  P  G PP    GG  G PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPP----GGPPGAPP 56



 Score = 25.0 bits (52), Expect = 0.91
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +3

Query: 630 PXXXPXPXXXXXPXPPPPXPPPPXXPXPGGPP 725
           P     P       PP P   PP    PG PP
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 672 PPPPXPPPPXXPXPGGP 722
           PP P PPPP  P   GP
Sbjct: 338 PPKPAPPPP-PPSSSGP 353



 Score = 25.4 bits (53), Expect = 0.69
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 828 PPXPXPXPPPP 860
           PP P P PPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 650 PXXPXPXPPPPXPPXP 697
           P  P P PPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 666 PXPPPPXPPPPXXPXP 713
           P  P P PPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 822 PPPPXPXPXPPPPPXP 869
           PP P P P PP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = -3

Query: 853 GGXGXGXGGGGXXGXXXGGXXXXGGXXLGGGGG 755
           GG G    GG   G   GG    G    GGGGG
Sbjct: 20  GGPGSSSAGGVVTG-ASGGSIVVGANNGGGGGG 51


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 672  PPPPXPPP 695
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 675  PPPXPPPP 698
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 824  PPPPPXPP 847
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362



 Score = 20.6 bits (41), Expect(2) = 2.6
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 843  PXPPPPP 863
            P PPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 20.6 bits (41), Expect(2) = 2.6
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 849  PPPPPXP 869
            PPPPP P
Sbjct: 1356 PPPPPPP 1362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 269,449
Number of Sequences: 438
Number of extensions: 13128
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)