Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_B24
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 32 0.093
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.22
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.7
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 4.6
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 4.6
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 27 4.6
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.1
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.1
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc... 26 8.1
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 26 8.1
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 26 8.1
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 32.3 bits (70), Expect = 0.093
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = -1
Query: 318 IPIAVSD--EIVDGILDDASTRLFLEQQNQRNSRVVIGSGDSIDEPRFRSGRSGQNVNV 148
IP+A++D E+V+ DD + ++ + N R+ G+S +EPR R SG+ VNV
Sbjct: 238 IPLAMNDLFEMVENNSDDDTFQIRISYLEIYNERIRDLIGNSDEEPRIRENASGE-VNV 295
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.1 bits (67), Expect = 0.22
Identities = 26/98 (26%), Positives = 46/98 (46%)
Frame = +2
Query: 248 SRNNRVEASSRIPSTISSETAIGMF*SSPTNCGSGRVRKSSNTTSLFSLDRCYPRATSRS 427
S ++ +SS S SS + I SSP++ SS ++S FS +S S
Sbjct: 322 SSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFS-----STVSSSS 376
Query: 428 STRETILPSNSVLRQTQITTESHTAMPTTRAARTSAGS 541
ST + L S+S ++ SH++ ++ + +S+ S
Sbjct: 377 STSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKS 414
Score = 26.6 bits (56), Expect = 4.6
Identities = 28/117 (23%), Positives = 53/117 (45%)
Frame = +2
Query: 191 SSMLSPLPITTRLFL*FCCSRNNRVEASSRIPSTISSETAIGMF*SSPTNCGSGRVRKSS 370
SS+ S P+T+ F S ++ +S S+ SS T ++PT+ S + SS
Sbjct: 162 SSLSSSDPLTSSTF----SSLSSSTSSSQPSVSSTSSSTFSS---AAPTSTSSSYLSSSS 214
Query: 371 NTTSLFSLDRCYPRATSRSSTRETILPSNSVLRQTQITTESHTAMPTTRAARTSAGS 541
+S S + SS + +PS S + ++ S ++ +T ++ +S+ S
Sbjct: 215 VVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSS 271
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.3 bits (60), Expect = 1.5
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 1/99 (1%)
Frame = +2
Query: 248 SRNNRVEASSRIPSTISSETAIGMF*SSPTNCGSGRVRKSSNTTSLFSLDRC-YPRATSR 424
S + + SS +PS+ S T + S+ S S N+T+ S +S
Sbjct: 271 SSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSA 330
Query: 425 SSTRETILPSNSVLRQTQITTESHTAMPTTRAARTSAGS 541
+ST T S + T S ++ P T T+A S
Sbjct: 331 NSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATS 369
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 2.7
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +2
Query: 290 TISSETAIGMF*SSPTNCGSGRVRKSSNTTSLF-SLDRCYPRATSRSSTRETILPSNSVL 466
TISS T + + TNC +++T+ L+ S P +TS SST+ + + +
Sbjct: 574 TISSSTPVTSTPVTTTNC-------TTSTSVLYTSTPITSPNSTSSSSTQVSWNSTTPIT 626
Query: 467 RQTQITTESHTAMPTTRAARTS 532
+ S T++P T RTS
Sbjct: 627 GTSTSKVTSSTSIPLTSTNRTS 648
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 164 PLRPERKRGSSMLSPLPI 217
PL+P+R RG L PLP+
Sbjct: 144 PLKPKRGRGRPRLHPLPV 161
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 4.6
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +2
Query: 281 IPSTISSETAIGMF*SSPTN----CGSGRVRKSSNTTSLFSLDRCYPRATSRSSTRETIL 448
+P+T+S+ ++ F SSP+ G+ + SSN + + Y + ++T T
Sbjct: 518 VPTTVSTSGSVSSFSSSPSPTSSFSGTSALSSSSNEETTTTTQVTYTTSPEETTTTMTTT 577
Query: 449 PSNSVLRQTQITTESHTA 502
+S +T I+T S T+
Sbjct: 578 TCSSRPEET-ISTVSTTS 594
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +1
Query: 400 VLSESNVKIINKRDNLAIKLGAAADSDNDRIAYGDANDKSSENV 531
+LS++ +I+N + +K G A+D D++ GD +SSE++
Sbjct: 755 ILSDAQFRILNNLASTMLKDGKASDDDDN----GDWRPESSESL 794
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 6.1
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +2
Query: 278 RIPSTISSETAIGMF*SSPTNCGSGRVRKSSNTTSLFSLDRCYPRATSRSSTRETILPS- 454
R ST SS ++ + S + + SS +TS S A+ S++ E I S
Sbjct: 50 RRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSS-GTSVITASDVSASNEIISSST 108
Query: 455 -NSVLRQTQITTESHTAMPTT 514
NS+ +Q + TE T PTT
Sbjct: 109 NNSIHQQVSVVTEYVTIQPTT 129
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.2 bits (55), Expect = 6.1
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +2
Query: 269 ASSRIPSTISSETAIGMF*SSPTNCGSGRVRKSSNTTSLFSLDRCYPRATSR--SSTRET 442
+SS PST SS ++ SS ++ S KSS+ +S + R TS SS R T
Sbjct: 136 SSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRTTSH---RTTSHKSSSYRPT 192
Query: 443 ILPSNSV 463
+ P ++
Sbjct: 193 VFPYTTI 199
>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 514 KSSENVSWKLIPLWENNRVYFKIYSVR--XHQYLKLGTGTDGENXHSVYGD 660
K ++ +K IPL++NN KI +V + + +GT +G N S D
Sbjct: 249 KECVDIFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNGANSSSTRQD 299
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +1
Query: 235 LILLLEKQSSGSIIEDTVNNLIRDGNRNVLEFAYKLWIGEGKEIVK 372
+IL LEK + +++ VNN I +R++ A +I +G+ IVK
Sbjct: 45 VILALEKVVTSKLLKPRVNNRIGSVDRHI-GIATTGFIPDGQHIVK 89
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +2
Query: 404 YPRATSRSSTRETILPSNSVLRQTQIT-TESHTAMPTTRAARTSAGS 541
YP + +R+ T E ++P+ + +T+I+ +E +T+ T A T++G+
Sbjct: 355 YPASGTRTGTVEVVIPTAGTVTETEISGSELYTS--TFPANGTTSGT 399
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,075,361
Number of Sequences: 5004
Number of extensions: 59905
Number of successful extensions: 184
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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