Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_B24
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 30 2.1
05_06_0095 - 25482796-25483019,25483470-25484093,25484427-25484676 30 2.1
04_04_1020 + 30179214-30179285,30179597-30179671,30179839-301799... 30 2.1
08_01_0521 + 4540627-4540794,4541822-4541836,4541957-4543036 29 4.9
05_05_0226 + 23442971-23443857,23444209-23446324 29 4.9
02_04_0610 + 24335153-24337724,24337835-24338256 29 4.9
07_03_0276 + 16166528-16166796,16166824-16167291,16168048-161684... 29 6.5
07_03_0265 + 15976331-15976645,15977575-15977784,15977869-159779... 29 6.5
10_06_0170 + 11431540-11432259,11434552-11434644,11434739-114348... 28 8.5
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 413 ATSRSSTRETILPSNSVLRQTQITTESHTAMPTTRAARTSA 535
+ R S+R LPS+ R QI HTA P + AA A
Sbjct: 2768 SAGRDSSRAAQLPSSDEPRNEQIKDSDHTAQPFSSAAPDQA 2808
>05_06_0095 - 25482796-25483019,25483470-25484093,25484427-25484676
Length = 365
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 456 FDGKIVSLVDDLDVALG*HLSKLNREVVFDDFLTLP 349
F+ K+V LVD + G H + +N +FDD L P
Sbjct: 253 FNQKLVGLVDQFNTLPGAHFTYINIYGIFDDILGAP 288
>04_04_1020 +
30179214-30179285,30179597-30179671,30179839-30179947,
30180425-30180642,30180729-30181309,30181387-30182185
Length = 617
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +1
Query: 478 DNDRIAYGDANDKSSENVSWKLIPLWENNRVYFKIYSVRXHQYLKLGTGTDG 633
D DR + + +LIP+W + VYF + +++ GT TDG
Sbjct: 367 DGDRWRLCTVSQVEEVKILLRLIPIWLTSAVYFIANTQAQTTFVQQGTKTDG 418
>08_01_0521 + 4540627-4540794,4541822-4541836,4541957-4543036
Length = 420
Score = 29.1 bits (62), Expect = 4.9
Identities = 31/124 (25%), Positives = 56/124 (45%)
Frame = +1
Query: 163 SAPTRAETRLVDAITTADYNTAVSLILLLEKQSSGSIIEDTVNNLIRDGNRNVLEFAYKL 342
+ PTRAE + TTA+ L EKQ + ++ + ++D + +E +
Sbjct: 214 ATPTRAEEKSSKNTTTAESRHPKDTSLE-EKQVKSATSKE--EDGLQDKTDDAIEDIDDI 270
Query: 343 WIGEGKEIVKHYFPVQFRQVLSESNVKIINKRDNLAIKLGAAADSDNDRIAYGDANDKSS 522
+ GE K FP + ++ L+ S V ++ + G + D D+DR+ Y +K
Sbjct: 271 Y-GESHS-KKIEFPRRNKKFLTNSGVDSQDEELHRIEHPGNSLDQDSDRVRYNKLLEKEI 328
Query: 523 ENVS 534
+ VS
Sbjct: 329 DKVS 332
>05_05_0226 + 23442971-23443857,23444209-23446324
Length = 1000
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 118 LAASAGLIDLDINILSAPTRAETRLVDAITTADYNTAVSLILLLEKQSSGSIIEDTVNNL 297
LA A + LD+ +++A + R + TTAD TAV+ + E +E+ V+
Sbjct: 31 LAQEAQSLQLDLRMIAAVMDDQLRAMGRATTADARTAVARLHAEEMLDLAHDVEECVDRF 90
Query: 298 I 300
+
Sbjct: 91 L 91
>02_04_0610 + 24335153-24337724,24337835-24338256
Length = 997
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +1
Query: 139 IDLDINILSAPTRAETRLVDAITTADYNTAVSLILLLEKQSSGSIIEDTVNNL 297
+DL++N+L A + +DA+T TA+ ++ L E Q G +I +++ +L
Sbjct: 313 LDLELNMLEAKDTEGWKFLDALTNC---TALEVLALAENQLQG-VIPNSIGSL 361
>07_03_0276 +
16166528-16166796,16166824-16167291,16168048-16168414,
16168565-16168587,16170094-16170385
Length = 472
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Frame = +2
Query: 17 LTIGNSLRFDQTYLGCQLPRESR*SF------WCFSRPACWRPAPVLLT 145
+T+ +R+ Y C+LPR +R S WC R + P P T
Sbjct: 392 VTVSGEVRYQAHYTKCKLPRRARSSCSLRRRRWCSGRSSASLPLPTRTT 440
>07_03_0265 +
15976331-15976645,15977575-15977784,15977869-15977916,
15978307-15978675,15978736-15978747,15978763-15978870,
15979156-15979493,15980313-15980430,15983247-15984107,
15984457-15984750
Length = 890
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 216 IGSGDSIDEPRFRSGRSGQNVNVQVNKTGAGRQHA 112
+G GD DE R R+ +S + N+ V + AG +HA
Sbjct: 272 LGHGDQHDELRPRAIQSFKRRNIHVVRVSAGDEHA 306
>10_06_0170 +
11431540-11432259,11434552-11434644,11434739-11434806,
11434873-11435011,11435179-11435229,11435600-11435675,
11436216-11436274
Length = 401
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 344 GSGRVRKSSNTTSLFSLDRCYPRATSRSSTRETILP 451
G GR R + + DRCY RA + R T +P
Sbjct: 17 GGGRRRWQKRLSPTLARDRCYTRAFRSAGLRPTAVP 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,796,557
Number of Sequences: 37544
Number of extensions: 428103
Number of successful extensions: 1144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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