Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_B21
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.40 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   8.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 811 PPXPXPPPXPP 843
           PP P PPP PP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 23.0 bits (47), Expect(2) = 0.40
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 629 PPPPXPPPP 655
           PP P PPPP
Sbjct: 338 PPKPAPPPP 346



 Score = 21.4 bits (43), Expect(2) = 0.40
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 632 PPPXPPPPXXXG 667
           P P PPPP   G
Sbjct: 341 PAPPPPPPSSSG 352


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 629  PPPPXPPPPXXXGFL 673
            PPPP PPP     +L
Sbjct: 1355 PPPPPPPPSSGQAYL 1369


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +1

Query: 106 RFPEQERWHEEEGHASPIRML 168
           R P +  WH  E H S  + L
Sbjct: 149 RTPTEASWHSPEAHISVAQKL 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,606
Number of Sequences: 438
Number of extensions: 8632
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)