Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_B18
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c...   145   8e-36
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    84   3e-17
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    28   1.5  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    27   4.7  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    26   6.2  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    26   6.2  

>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 291

 Score =  145 bits (351), Expect = 8e-36
 Identities = 67/159 (42%), Positives = 100/159 (62%)
 Frame = +2

Query: 116 DTCLSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVTCE 295
           +T L+N  K F+   + +G RLDGR  ++ R L+I FG EYG   VS G T++++ +T E
Sbjct: 6   ETSLNN--KEFVLNSLEKGLRLDGRQLSDFRSLEIQFGKEYGQVDVSFGHTRVMARITTE 63

Query: 296 VAQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLC 475
           + +P   RP +GI  I  EL P+A   FEA R +D  + + RL+EK  + S  +D ESLC
Sbjct: 64  ITKPYTDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKAVRRSNALDTESLC 123

Query: 476 IVVEEKVWSLRINIKVLNHDGNLTECASIATLASIAHFR 592
           I+  +K W +R ++  +NHDGNL + A IA +A++ HFR
Sbjct: 124 IISGQKCWHVRASVHFINHDGNLVDAACIAVIAALCHFR 162



 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
 Frame = +3

Query: 594 RPDFTRDGDRVIIHTLTEKDPIPTVLYHYPVCTTFALYSN-DILLSDPNFLEESVC 758
           RP+ T  G+ V +H + E+ P+P  + H P+C TF+ ++N ++ + D    EE +C
Sbjct: 163 RPELTVVGEEVTVHPVEERVPVPLSILHMPICVTFSFFNNGELAIVDATLEEEDLC 218


>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 83.8 bits (198), Expect = 3e-17
 Identities = 45/150 (30%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
 Frame = +2

Query: 140 KNFIQKIVSQGHRLDGRNFNETRKLDIS---FGSEYGCCIVSLGETKILSEVTCEVAQPK 310
           + ++  +++Q  R DGR+ +E R++ I+     +  G  I+  GE   +  +  E+A+P 
Sbjct: 23  EQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIAEPF 82

Query: 311 QIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEE 490
           +  PNEG I  N+EL+P+ + +F+    +DL   + + L +  + S  I+L+SLCI  ++
Sbjct: 83  ENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSLCIFEKK 142

Query: 491 KVWSLRINIKVLNHDGNLTECASIATLASI 580
             W L  +I  LN+DG+  + A  A  A++
Sbjct: 143 AAWVLYADIICLNYDGSAFDYAWAALFAAL 172


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 321 GLICFG*ATSHVTSDRIFVSPKDTI 247
           GLI F  AT+H ++ + F+ PKDT+
Sbjct: 203 GLIAFRKATAHQSAMKEFLKPKDTL 227


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 413  LVRLLEKCYKDSKCIDLESLCIVVEEKVWSLRINIKVLN 529
            LVR+L K   D + + +++LC +V +  +   I I ++N
Sbjct: 1014 LVRMLGKSNGDLRAVIMDTLCAIVSQLGYDYSIFIPMVN 1052


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -1

Query: 615 HLL*NQVSLKCAIEASVAILAHSVKLPSWFRTLILILKDQTFSSTTMQSDSRSMH 451
           H L +   + C      +IL HS+ LP   RT I +   Q   S    +   SMH
Sbjct: 468 HQLYDSDVMDCCFSFLASILTHSIALPRLLRTKIDLCTLQISLSNPTSTVLISMH 522


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 299 AQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSK 451
           A   +I+PNE +  + V  NP    + E  +     V  ++ L+K Y++S+
Sbjct: 189 ASSARIQPNEDVQSVVVHSNPSWKNKVEQIKNESRLVRKIQELKKSYQESE 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,659,872
Number of Sequences: 5004
Number of extensions: 78859
Number of successful extensions: 169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)