Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_B16
(992 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 33 0.083
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.13
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.44
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 30 0.44
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.58
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.1
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 4.1
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 4.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.1
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 27 4.1
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 5.4
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 26 9.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 9.5
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 32.7 bits (71), Expect = 0.083
Identities = 17/31 (54%), Positives = 17/31 (54%)
Frame = -3
Query: 783 GGXRGGXLXGXXGGGGAXXXWGRGGXGXGRG 691
GG RGG G G GGA GRGG GRG
Sbjct: 37 GGGRGGARGGRGGRGGARG--GRGGSSGGRG 65
Score = 29.9 bits (64), Expect = 0.58
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -2
Query: 991 GGRAGGVGXXRXGXAXRGGGXGGGG 917
G R GG G R G RGG GG G
Sbjct: 34 GARGGGRGGARGGRGGRGGARGGRG 58
Score = 29.5 bits (63), Expect = 0.77
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -3
Query: 780 GXRGGXLXGXXGGGGAXXXWGRGGXGXGRG 691
G GG G GGG GRGG G RG
Sbjct: 26 GGFGGGRGGARGGGRGGARGGRGGRGGARG 55
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -3
Query: 783 GGXRGGXLXGXXGGGGAXXXWGRGGXGXGRG 691
GG GG G GG G GRGG GRG
Sbjct: 19 GGFNGGR-GGFGGGRGGARGGGRGGARGGRG 48
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/31 (51%), Positives = 16/31 (51%)
Frame = -3
Query: 783 GGXRGGXLXGXXGGGGAXXXWGRGGXGXGRG 691
GG RGG G GG G GRGG GRG
Sbjct: 33 GGARGGGRGGARGGRG-----GRGGARGGRG 58
Score = 27.9 bits (59), Expect = 2.3
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = -3
Query: 780 GXRGGXLXGXXGGGGAXXXWGRGGXGXGRG 691
G RGG G GG GRGG G GRG
Sbjct: 6 GSRGGR--GGSRGGRGGFNGGRGGFGGGRG 33
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.44
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 692 PRPXPXPPRPXXXXAPPPPXXPXNXPPRXPP 784
P P P PP PPPP P PP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776
Score = 29.1 bits (62), Expect(2) = 0.13
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = +3
Query: 918 PPPPXPPP--RXAXPXLXXPTPPAL 986
PPPP PPP A P P PPA+
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAV 785
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +3
Query: 441 GPPPPXXPPPPXPCAXGXXXXPXP 512
GPPPP PPPP G P P
Sbjct: 760 GPPPP--PPPPGVAGAGPPPPPPP 781
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 692 PRPXPXPPRPXXXXAPPPPXXPXNXPPRXPP 784
P P P P PPPP PP PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.5 bits (58), Expect = 3.1
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +3
Query: 441 GPPPPXXPPPPXPCAXGXXXXPXP 512
GPPPP PPP P P
Sbjct: 774 GPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +3
Query: 924 PPXPPPRXAXPXLXXPTPPALPP 992
PP PPP P PP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 692 PRPXPXPPRPXXXXAPPPPXXP 757
P P P PP PPPP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782
Score = 21.4 bits (43), Expect(2) = 0.13
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +3
Query: 768 PPAXPPXGXPXPPLXP 815
PP P G P PP P
Sbjct: 752 PPPAPIMGGPPPPPPP 767
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.3 bits (65), Expect = 0.44
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 918 PPPPXPPPRXAXPXLXXPTPP 980
PPPP PPP P P PP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +2
Query: 710 PPRPXXXXAPPPPXXPXNXPPRXPPXG 790
PP PPP P + PP PP G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +2
Query: 443 PPPPXPXPPPPXLRXXXLXPPXP 511
P P P PPPP PP P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPP 28
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 921 PPPXPPPRXAXPXLXXPTPPALPP 992
PP PPP P P+ P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
Score = 22.2 bits (45), Expect(2) = 7.7
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 447 PPPXXPPPPXP 479
PP PPPP P
Sbjct: 20 PPSQPPPPPPP 30
Score = 21.8 bits (44), Expect(2) = 7.7
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +3
Query: 441 GPPPPXXPPP 470
G PPP PPP
Sbjct: 7 GNPPPPPPPP 16
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 30.3 bits (65), Expect = 0.44
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -3
Query: 771 GGXLXGXXGGGGAXXXWGRGGXGXGRG 691
GG G G GG GRGG G GRG
Sbjct: 447 GGSRGGRGGFGGRGGFGGRGGFGGGRG 473
Score = 26.6 bits (56), Expect = 5.4
Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 783 GGXRGGXLX-GXXGGGGAXXXWGRGGXGXGRG 691
GG RGG G GG G +G GG G GRG
Sbjct: 447 GGSRGGRGGFGGRGGFGGRGGFG-GGRGRGRG 477
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.58
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +2
Query: 692 PRPXPXPPRPXXXXAPPPPXXPXNXPPRXPPXG 790
P P PP P + PPP P + P P G
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747
Score = 27.5 bits (58), Expect = 3.1
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 443 PPPPXPXPPPPXLRXXXLXPP 505
PPPP PPPP PP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPP 1728
Score = 26.6 bits (56), Expect = 5.4
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = +2
Query: 692 PRPXPXPPR-PXXXXAPPPPXXPXNXPPRXPP 784
P P P P P APP P P + PP PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPP--PP 1734
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 921 PPPXPPPRXAXPXLXXPTPPALPP 992
P P PPP P P PA PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPP 1728
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 918 PPPPXPPPRXAXPXLXXPTP 977
PPPP PP A P P P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 698 PXPXPPRPXXXXAPPPPXXPXNXPP 772
P P P APPPP P N P
Sbjct: 1365 PKPQIPDSSNVHAPPPPVQPMNAMP 1389
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +2
Query: 695 RPXPXPPRPXXXXAPPPPXXPXNXPPRXPP 784
RP P PPPP PP PP
Sbjct: 1693 RPQSAAPPQMSAPTPPPPPMSVPPPPSAPP 1722
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = +3
Query: 918 PPPPXPP--PRXAXPXLXXPTPPALP 989
PP P PP P A P L PP+LP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLP 440
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +2
Query: 698 PXPXPPRPXXXXAPPPPXXPXNXPPRXPP 784
P P PPR + P P + PP PP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Frame = +2
Query: 218 APXXPKXP-GXPXXPPLPXKIPXXP 289
AP P P G P PPLP P P
Sbjct: 453 APIAPPLPAGMPAAPPLPPAAPAPP 477
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = +2
Query: 692 PRPXPX-PPRPXXXXAPPPPXXPXNXPPRXPP 784
P+P PP P APP P PP PP
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 692 PRPXPXPPRPXXXXAPPPPXXPXNXPPRXPP 784
P P PP P A PP P PP P
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 692 PRPXPXPPRPXXXXAPPPPXXPXNXPPRXPP 784
P P PP P A PP P PP P
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164
Score = 25.8 bits (54), Expect = 9.5
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = +2
Query: 692 PRPXPXPPRPXXXXAPPPPXXPXNXPPRXPP 784
P P PP P PP P P PP
Sbjct: 1035 PVPSTAPPVPIPTSTPPVPKSSSGAPSAPPP 1065
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 991 GGRAGGVGXXRXGXAXRGGGXGGGG 917
GG GG+G G GGG GG G
Sbjct: 245 GGFGGGLGGFGGGPGGFGGGPGGHG 269
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -2
Query: 991 GGRAGGVGXXRXGXAXRGGGXGGGG 917
GG GG G G GGG GG G
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFG 248
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = +2
Query: 692 PRPXPXPPRPXXXXAPPPPXXPXNXPPRXPP 784
P P P P PPPP + P PP
Sbjct: 729 PAPPTPAPTPAVKHHPPPPPVRSSISPSMPP 759
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +2
Query: 683 SXXPRPXPXPPRPXXXXAPPPPXXPXNXPPRXP 781
S P P PP P P P P PP P
Sbjct: 156 SAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP 188
Score = 25.8 bits (54), Expect = 9.5
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +2
Query: 683 SXXPRPXPXPPRPXXXXAPPPPXXPXNXPPRXPP 784
S PRP PP P APP P P PP
Sbjct: 142 SAPPRPSIPPPSPAS--APPIPSKAPPIPSSLPP 173
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 921 PPPXPPPRXAXPXLXXPTPPALPP 992
PPP P P P P +LPP
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPP 173
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 27.1 bits (57), Expect = 4.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 417 SXAPKKXXGPPPPXXPPPPXP 479
S +P++ PP PPPP P
Sbjct: 259 SESPRRSVSSTPPVHPPPPVP 279
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = +2
Query: 698 PXPXPPRPXXXXAPPPPXXPXNXPPRXPPXG 790
P P PP PP PP PP G
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPPAG 1912
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 25.8 bits (54), Expect = 9.5
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 933 PPPRXAXPXLXXPTPPALPP 992
PPPR A P T ALPP
Sbjct: 9 PPPRRAAPARSASTAAALPP 28
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 444 PPPPXXPPPPXPCAXGXXXXP 506
PPPP PPP A G P
Sbjct: 945 PPPPPPPPPLVSAAGGKFVSP 965
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.308 0.137 0.447
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,665,788
Number of Sequences: 5004
Number of extensions: 22615
Number of successful extensions: 330
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 513276802
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
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