Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_B13
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 40 5e-04
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.32
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.42
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 3.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.9
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 27 3.9
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 3.9
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 3.9
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 3.9
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 25 9.1
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 39.5 bits (88), Expect = 5e-04
Identities = 16/32 (50%), Positives = 16/32 (50%)
Frame = +1
Query: 631 PPPXXGGGGGXPPPXXKXXXXXXXPPPPPPPP 726
PPP GG PPP PPPPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 36.3 bits (80), Expect = 0.005
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = +3
Query: 630 PPPXXGGGGGXXPPXXKXXXXXXXPPPPPPPP 725
PPP GG PP PPPPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 31.1 bits (67), Expect = 0.18
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = +3
Query: 618 GGGXPPPXXGGGGGXXPPXXKXXXXXXXPPPPPPP 722
GG PPP G G PP PPPPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPP----------PPPPPPP 783
Score = 29.1 bits (62), Expect = 0.74
Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Frame = -3
Query: 670 GGXXPPPPP--XXGGGXPPP 617
GG PPPPP G G PPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPP 778
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +1
Query: 664 PPPXXKXXXXXXXPPPPPPPP 726
P P PPPPPPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPP 768
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -2
Query: 659 PPPPPXXGGGXPPP 618
PPP P GG PPP
Sbjct: 752 PPPAPIMGGPPPPP 765
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.32
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +3
Query: 630 PPPXXGGGGGXXPPXXKXXXXXXXPPPPPPP 722
PPP PP PPPPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 30.3 bits (65), Expect = 0.32
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 631 PPPXXGGGGGXPPPXXKXXXXXXXPPPPPPP 723
PPP PP PPPPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +3
Query: 630 PPPXXGGGGGXXPPXXKXXXXXXXPPPPPP 719
PPP G PP PP PPP
Sbjct: 364 PPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +1
Query: 631 PPPXXGGGGGXPPPXXKXXXXXXXPPPPPP 720
PPP G PP PP PPP
Sbjct: 364 PPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 631 PPPXXGGGGGXPPPXXKXXXXXXXPPPPPPPP 726
PPP G PP PPPPPPP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSL--PPPPPPP 343
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = +1
Query: 631 PPPXXGGGGGXP-PPXXKXXXXXXXPPPPPP 720
PPP G P PP + PPPPPP
Sbjct: 341 PPPRSNAAGSIPLPPQGRSA-----PPPPPP 366
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.42
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 655 GGXPPPXXKXXXXXXXPPPPPPPP 726
G PPP PPPPPPP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 29.5 bits (63), Expect = 0.56
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 652 GGGXPPPXXKXXXXXXXPPPPPPP 723
G PPP PPPPPPP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +3
Query: 651 GGGXXPPXXKXXXXXXXPPPPPPP 722
G PP PPPPPPP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPP 30
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 702 PPPPPPPP 725
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 703 PPPPPPPP 726
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 702 PPPPPPPP 725
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 703 PPPPPPPP 726
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 702 PPPPPPPP 725
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 703 PPPPPPPP 726
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 702 PPPPPPPP 725
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 703 PPPPPPPP 726
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = +3
Query: 630 PPPXXGGGGGXXPPXXKXXXXXXXPPPPPPP 722
PPP P PPPPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 670 GGXXPPPPPXXGGGXPPP 617
G PPPP G G PPP
Sbjct: 125 GYTAPPPPAGFGRGAPPP 142
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 702 PPPPPPPP 725
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 703 PPPPPPPP 726
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 702 PPPPPPPP 725
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 703 PPPPPPPP 726
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 702 PPPPPPPP 725
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 703 PPPPPPPP 726
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 702 PPPPPPPP 725
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 703 PPPPPPPP 726
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 770 KKKKKKXKKXXXXXXGGGGGGG 705
K K K K+ GGGGGGG
Sbjct: 32 KAKLAKLKRELITPTGGGGGGG 53
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,909,700
Number of Sequences: 5004
Number of extensions: 31119
Number of successful extensions: 419
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -