Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_B12
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    34   0.025
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    29   1.2  
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    27   3.7  
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    27   4.9  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    26   8.6  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   8.6  

>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 34.3 bits (75), Expect = 0.025
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 230 PWCWYCNREFDDEKILIQHQKAXHFKCHIC 319
           P C +CN  F D+  L +H +  H +C+IC
Sbjct: 245 PKCEFCNTHFYDDDELFKHCREKHERCYIC 274


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 302 NXSLSDVG*ESFRRQTPCYNTSTKVWMPSSSSY 204
           N SL +V    F++QTP YN + KV +  SS +
Sbjct: 819 NYSLENVVLNIFKKQTPYYNQADKVHLWQSSRF 851


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 284 HQKAXHFKCHICHKKLYTGPGLSI 355
           ++   +F C++C   +YTG GL++
Sbjct: 375 NKSVLYFACYLCSVGVYTGAGLNV 398


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 566 LGARPSPPVPWRYCPHXGAPPPGMYP 643
           LG  P  P PW +      PPP  YP
Sbjct: 344 LGIAPGAPPPWLFAMQRYGPPPS-YP 368


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +2

Query: 236 CWYCNRE-FDDEKILIQHQKAXHFKC 310
           CW+CN+  F +  +L   Q A H  C
Sbjct: 837 CWHCNQPLFSEPFVLFPCQHAFHRSC 862


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 551 PTPXLLGARPSPPVP 595
           PTP + G+RP PP P
Sbjct: 347 PTPQVQGSRPPPPPP 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,921,156
Number of Sequences: 5004
Number of extensions: 53871
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)