Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_B12
         (923 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    31   0.015
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.97 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.97 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   1.3  
DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    24   1.7  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    24   1.7  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    24   1.7  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    24   1.7  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    24   1.7  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    24   1.7  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    24   1.7  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          24   1.7  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          24   1.7  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          24   1.7  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          24   1.7  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          24   1.7  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          24   1.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          24   1.7  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    24   1.7  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    24   1.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   9.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   9.0  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 31.1 bits (67), Expect = 0.015
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
 Frame = +2

Query: 197 KMGRKKKKASKPW-CWYCNREFDDEKILIQHQKAXH----FKCHICHKKLYTGPGLSIHC 361
           K+  +     KP+ C  C + F    +L  HQ A +    +KC +CH+   +   + +H 
Sbjct: 220 KVHTRTHTGEKPYTCDICGKSFGYNHVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHI 279

Query: 362 MQVHKEAIDKVPNSLPNXSNIQI 430
                 ++   P   P    I+I
Sbjct: 280 KTHSDSSVVGSPRDSPIEPEIEI 302


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.97
 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +1

Query: 16  KL*GTLKI-WLCSFFCNWRG 72
           +L GTL + W+  +FC W+G
Sbjct: 208 ELAGTLAVVWIMCYFCIWKG 227


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.97
 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +1

Query: 16  KL*GTLKI-WLCSFFCNWRG 72
           +L GTL + W+  +FC W+G
Sbjct: 261 ELAGTLAVVWIMCYFCIWKG 280


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +1

Query: 16  KL*GTLK-IWLCSFFCNWRG 72
           +L GTL  +W+  +FC W+G
Sbjct: 175 ELAGTLLLVWILCYFCIWKG 194


>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +1

Query: 580 FPPRPLAILPTPXGPPXRXVSCHX*PXNPMMPPFHAGAPXLMMXRP*P 723
           FPPRP+ + P          S H  P  P  P F    P +   RP P
Sbjct: 99  FPPRPIMVRPWVPMRGQVPGSRHIGPLTPFPPRFI--PPDMYRLRPPP 144


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +1

Query: 580 FPPRPLAILPTPXGPPXRXVSCHX*PXNPMMPPFHAGAPXLMMXRP*P 723
           FPPRP+ + P          S H  P  P  P F    P +   RP P
Sbjct: 99  FPPRPIMVRPWVPMRGQVPGSRHIGPLTPFPPRFI--PPDMYRLRPPP 144


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +1

Query: 580 FPPRPLAILPTPXGPPXRXVSCHX*PXNPMMPPFHAGAPXLMMXRP*P 723
           FPPRP+ + P          S H  P  P  P F    P +   RP P
Sbjct: 99  FPPRPIMVRPWVPMRGQVPGSRHIGPLTPFPPRFI--PPDMYRLRPPP 144


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +1

Query: 580 FPPRPLAILPTPXGPPXRXVSCHX*PXNPMMPPFHAGAPXLMMXRP*P 723
           FPPRP+ + P          S H  P  P  P F    P +   RP P
Sbjct: 99  FPPRPIMVRPWVPMRGQVPGSRHIGPLTPFPPRFI--PPDMYRLRPPP 144


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +1

Query: 580 FPPRPLAILPTPXGPPXRXVSCHX*PXNPMMPPFHAGAPXLMMXRP*P 723
           FPPRP+ + P          S H  P  P  P F    P +   RP P
Sbjct: 99  FPPRPIMVRPWVPMRGQVPGSRHIGPLTPFPPRFI--PPDMYRLRPPP 144


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +1

Query: 580 FPPRPLAILPTPXGPPXRXVSCHX*PXNPMMPPFHAGAPXLMMXRP*P 723
           FPPRP+ + P          S H  P  P  P F    P +   RP P
Sbjct: 99  FPPRPIMVRPWVPMRGQVPGSRHIGPLTPFPPRFI--PPDMYRLRPPP 144


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +1

Query: 580 FPPRPLAILPTPXGPPXRXVSCHX*PXNPMMPPFHAGAPXLMMXRP*P 723
           FPPRP+ + P          S H  P  P  P F    P +   RP P
Sbjct: 99  FPPRPIMVRPWVPMRGQVPGSRHIGPLTPFPPRFI--PPDMYRLRPPP 144


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +1

Query: 580 FPPRPLAILPTPXGPPXRXVSCHX*PXNPMMPPFHAGAPXLMMXRP*P 723
           FPPRP+ + P          S H  P  P  P F    P +   RP P
Sbjct: 348 FPPRPIMVRPWVPMRGQVPGSRHIGPLTPFPPRFI--PPDMYRLRPPP 393


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +1

Query: 580 FPPRPLAILPTPXGPPXRXVSCHX*PXNPMMPPFHAGAPXLMMXRP*P 723
           FPPRP+ + P          S H  P  P  P F    P +   RP P
Sbjct: 348 FPPRPIMVRPWVPMRGQVPGSRHIGPLTPFPPRFI--PPDMYRLRPPP 393


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +1

Query: 580 FPPRPLAILPTPXGPPXRXVSCHX*PXNPMMPPFHAGAPXLMMXRP*P 723
           FPPRP+ + P          S H  P  P  P F    P +   RP P
Sbjct: 348 FPPRPIMVRPWVPMRGQVPGSRHIGPLTPFPPRFI--PPDMYRLRPPP 393


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +1

Query: 580 FPPRPLAILPTPXGPPXRXVSCHX*PXNPMMPPFHAGAPXLMMXRP*P 723
           FPPRP+ + P          S H  P  P  P F    P +   RP P
Sbjct: 348 FPPRPIMVRPWVPMRGQVPGSRHIGPLTPFPPRFI--PPDMYRLRPPP 393


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +1

Query: 580 FPPRPLAILPTPXGPPXRXVSCHX*PXNPMMPPFHAGAPXLMMXRP*P 723
           FPPRP+ + P          S H  P  P  P F    P +   RP P
Sbjct: 348 FPPRPIMVRPWVPMRGQVPGSRHIGPLTPFPPRFI--PPDMYRLRPPP 393


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +1

Query: 580 FPPRPLAILPTPXGPPXRXVSCHX*PXNPMMPPFHAGAPXLMMXRP*P 723
           FPPRP+ + P          S H  P  P  P F    P +   RP P
Sbjct: 348 FPPRPIMVRPWVPMRGQVPGSRHIGPLTPFPPRFI--PPDMYRLRPPP 393


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +1

Query: 580 FPPRPLAILPTPXGPPXRXVSCHX*PXNPMMPPFHAGAPXLMMXRP*P 723
           FPPRP+ + P          S H  P  P  P F    P +   RP P
Sbjct: 347 FPPRPIMVRPWVPMRGQVPGSRHIGPLTPFPPRFI--PPDMYRLRPPP 392


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +1

Query: 580 FPPRPLAILPTPXGPPXRXVSCHX*PXNPMMPPFHAGAPXLMMXRP*P 723
           FPPRP+ + P          S H  P  P  P F    P +   RP P
Sbjct: 332 FPPRPIMVRPWVPMRGQVPGSRHIGPLTPFPPRFI--PPDMYRLRPPP 377


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +1

Query: 580 FPPRPLAILPTPXGPPXRXVSCHX*PXNPMMPPFHAGAPXLMMXRP*P 723
           FPPRP+ + P          S H  P  P  P F    P +   RP P
Sbjct: 348 FPPRPIMVRPWVPMRGQVPGSRHIGPLTPFPPRFI--PPDMYRLRPPP 393


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 502 LHXIFVWSCSFTSCRGYTFHSINL 431
           LH I+   C F + +  TFH +++
Sbjct: 84  LHNIWRPDCFFKNAKKVTFHEMSI 107


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 266 RRQTPCYNTSTKVWMPSSSSYP 201
           RR+TP YN+ +K+   S   +P
Sbjct: 411 RRRTPRYNSVSKIDRASRIVFP 432


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,379
Number of Sequences: 438
Number of extensions: 4944
Number of successful extensions: 31
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)