Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_B10
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     30   2.9  
05_06_0161 + 26078019-26078510                                         29   3.8  
09_06_0307 - 22190310-22190468,22190516-22190569,22190677-221910...    29   6.6  
06_03_0884 + 25651238-25652164,25653851-25654504                       29   6.6  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.7  

>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +2

Query: 347 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQXASKXPXTV 502
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>05_06_0161 + 26078019-26078510
          Length = 163

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -3

Query: 882 GCXPGXGVKXDRYXG*RGQGXGXEXGGLGQHRPGLGADG 766
           G  PG G   D +   RG G G   GG+G    G G  G
Sbjct: 96  GAVPGAGGAADAHGKGRGGGGGEGRGGVGAAAQGRGGGG 134


>09_06_0307 -
           22190310-22190468,22190516-22190569,22190677-22191053,
           22191234-22191436,22192798-22192925
          Length = 306

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 698 GEKXDRYPVSGQGSEQEXARGSXPGGNAWYLYSPVG 591
           G K D   VSG G+  E  RG    G+ W  +S VG
Sbjct: 86  GAKVDDTGVSGAGAASEADRGGAAAGSCW-AFSAVG 120


>06_03_0884 + 25651238-25652164,25653851-25654504
          Length = 526

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 610 YQAFPPGKLPRAXSCSDPCPLTGY 681
           ++  PPG L     CS+PC + GY
Sbjct: 375 FRLHPPGPLLLPRECSEPCQVLGY 398


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 296 NESAN---ARGEAVCVLGALPLPRSLTRCAR 379
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,244,278
Number of Sequences: 37544
Number of extensions: 398610
Number of successful extensions: 1080
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)