Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_B10
         (893 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98893-1|CAA67398.1|  589|Homo sapiens hTAFII68 protein.               31   5.6  
U51334-1|AAC50932.1|  592|Homo sapiens putative RNA binding prot...    31   5.6  
BC046099-1|AAH46099.2|  592|Homo sapiens TAF15 RNA polymerase II...    31   5.6  
AY197697-1|AAO13485.1|  589|Homo sapiens TAF15 RNA polymerase II...    31   5.6  
AB010067-2|BAA33812.1|  589|Homo sapiens RBP56/hTAFII68 protein.       31   5.6  
AB010067-1|BAA33811.1|  592|Homo sapiens RBP56/hTAFII68 protein.       31   5.6  
BC104916-1|AAI04917.1|  852|Homo sapiens SHROOM1 protein protein.      30   9.9  
BC104914-1|AAI04915.1|  852|Homo sapiens SHROOM1 protein protein.      30   9.9  
AF314142-1|AAM15526.1|  847|Homo sapiens apical protein 2 protein.     30   9.9  
AB075840-1|BAB85546.1|  871|Homo sapiens KIAA1960 protein protein.     30   9.9  

>X98893-1|CAA67398.1|  589|Homo sapiens hTAFII68 protein.
          Length = 589

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -3

Query: 870 GXGVKXDR--YXG*RGQGXGXEXGGLGQHRPGLGAD 769
           G G   DR  Y G RG G G + GG G  R G G D
Sbjct: 473 GGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGD 508


>U51334-1|AAC50932.1|  592|Homo sapiens putative RNA binding protein
           RBP56 protein.
          Length = 592

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -3

Query: 870 GXGVKXDR--YXG*RGQGXGXEXGGLGQHRPGLGAD 769
           G G   DR  Y G RG G G + GG G  R G G D
Sbjct: 476 GGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGD 511


>BC046099-1|AAH46099.2|  592|Homo sapiens TAF15 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 68kD
           protein.
          Length = 592

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -3

Query: 870 GXGVKXDR--YXG*RGQGXGXEXGGLGQHRPGLGAD 769
           G G   DR  Y G RG G G + GG G  R G G D
Sbjct: 476 GGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGD 511


>AY197697-1|AAO13485.1|  589|Homo sapiens TAF15 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 68kD
           protein.
          Length = 589

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -3

Query: 870 GXGVKXDR--YXG*RGQGXGXEXGGLGQHRPGLGAD 769
           G G   DR  Y G RG G G + GG G  R G G D
Sbjct: 473 GGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGD 508


>AB010067-2|BAA33812.1|  589|Homo sapiens RBP56/hTAFII68 protein.
          Length = 589

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -3

Query: 870 GXGVKXDR--YXG*RGQGXGXEXGGLGQHRPGLGAD 769
           G G   DR  Y G RG G G + GG G  R G G D
Sbjct: 473 GGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGD 508


>AB010067-1|BAA33811.1|  592|Homo sapiens RBP56/hTAFII68 protein.
          Length = 592

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -3

Query: 870 GXGVKXDR--YXG*RGQGXGXEXGGLGQHRPGLGAD 769
           G G   DR  Y G RG G G + GG G  R G G D
Sbjct: 476 GGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGD 511


>BC104916-1|AAI04917.1|  852|Homo sapiens SHROOM1 protein protein.
          Length = 852

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 650 PVPTPARLPDTCPPFXP 700
           P P+PAR P TCPP  P
Sbjct: 829 PSPSPARPPGTCPPVQP 845


>BC104914-1|AAI04915.1|  852|Homo sapiens SHROOM1 protein protein.
          Length = 852

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 650 PVPTPARLPDTCPPFXP 700
           P P+PAR P TCPP  P
Sbjct: 829 PSPSPARPPGTCPPVQP 845


>AF314142-1|AAM15526.1|  847|Homo sapiens apical protein 2 protein.
          Length = 847

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 650 PVPTPARLPDTCPPFXP 700
           P P+PAR P TCPP  P
Sbjct: 824 PSPSPARPPGTCPPVQP 840


>AB075840-1|BAB85546.1|  871|Homo sapiens KIAA1960 protein protein.
          Length = 871

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 650 PVPTPARLPDTCPPFXP 700
           P P+PAR P TCPP  P
Sbjct: 848 PSPSPARPPGTCPPVQP 864


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,531,505
Number of Sequences: 237096
Number of extensions: 2171433
Number of successful extensions: 6010
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6010
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)