Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_B10
         (893 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077531-1|AAC64610.1|  374|Caenorhabditis elegans Hypothetical ...    33   0.21 
S47168-2|AAB23866.2|  919|Caenorhabditis elegans UNC-5 protein.        29   5.9  
S47168-1|AAB23867.2|  947|Caenorhabditis elegans UNC-5 protein.        29   5.9  
AF047657-8|AAK18944.1|  328|Caenorhabditis elegans Hypothetical ...    29   5.9  
AF036698-5|AAB88356.2|  567|Caenorhabditis elegans Uncoordinated...    29   5.9  
AF036698-4|AAB88355.1|  919|Caenorhabditis elegans Uncoordinated...    29   5.9  

>AF077531-1|AAC64610.1|  374|Caenorhabditis elegans Hypothetical
           protein F13C5.2 protein.
          Length = 374

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 19/41 (46%), Positives = 21/41 (51%)
 Frame = -3

Query: 831 GQGXGXEXGGLGQHRPGLGADGXTXELGIPTRGGX*GRXPR 709
           G+G G    G G+ R G  A G T E G  TRGG  GR  R
Sbjct: 36  GRGRGGRGRGRGRGRGGATAAGATVEGGESTRGGGTGRGGR 76


>S47168-2|AAB23866.2|  919|Caenorhabditis elegans UNC-5 protein.
          Length = 919

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +1

Query: 529 HRLRPPDEHHKNXRSSXTWXNPTGL*RYQAFPPGKLPRAXSCSDPCPLTGYLSXFS 696
           HR+R P +   + R + T  NP  L     +  G+     SC  PC L G  S +S
Sbjct: 227 HRIRDPHDVLPHQRRTRTCNNPAPL-NDGEYCKGEEEMTRSCKVPCKLDGGWSSWS 281


>S47168-1|AAB23867.2|  947|Caenorhabditis elegans UNC-5 protein.
          Length = 947

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +1

Query: 529 HRLRPPDEHHKNXRSSXTWXNPTGL*RYQAFPPGKLPRAXSCSDPCPLTGYLSXFS 696
           HR+R P +   + R + T  NP  L     +  G+     SC  PC L G  S +S
Sbjct: 255 HRIRDPHDVLPHQRRTRTCNNPAPL-NDGEYCKGEEEMTRSCKVPCKLDGGWSSWS 309


>AF047657-8|AAK18944.1|  328|Caenorhabditis elegans Hypothetical
           protein F37B4.10 protein.
          Length = 328

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +2

Query: 656 PTPARLPDTCPP 691
           P PARLPD CPP
Sbjct: 141 PVPARLPDFCPP 152


>AF036698-5|AAB88356.2|  567|Caenorhabditis elegans Uncoordinated
           protein 5, isoform b protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +1

Query: 529 HRLRPPDEHHKNXRSSXTWXNPTGL*RYQAFPPGKLPRAXSCSDPCPLTGYLSXFS 696
           HR+R P +   + R + T  NP  L     +  G+     SC  PC L G  S +S
Sbjct: 227 HRIRDPHDVLPHQRRTRTCNNPAPL-NDGEYCKGEEEMTRSCKVPCKLDGGWSSWS 281


>AF036698-4|AAB88355.1|  919|Caenorhabditis elegans Uncoordinated
           protein 5, isoform a protein.
          Length = 919

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +1

Query: 529 HRLRPPDEHHKNXRSSXTWXNPTGL*RYQAFPPGKLPRAXSCSDPCPLTGYLSXFS 696
           HR+R P +   + R + T  NP  L     +  G+     SC  PC L G  S +S
Sbjct: 227 HRIRDPHDVLPHQRRTRTCNNPAPL-NDGEYCKGEEEMTRSCKVPCKLDGGWSSWS 281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,159,350
Number of Sequences: 27780
Number of extensions: 304309
Number of successful extensions: 689
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)