Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_B09
(854 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 35 0.085
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 35 0.085
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 35 0.085
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 35 0.085
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.20
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.20
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.20
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 33 0.34
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 33 0.34
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 32 0.60
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 31 0.79
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 30 1.8
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 30 1.8
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.2
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 29 3.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.2
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 29 4.2
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 29 4.2
AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical ... 29 5.6
AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical ... 29 5.6
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 29 5.6
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 5.6
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 28 7.4
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 28 7.4
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 28 9.7
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 9.7
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 28 9.7
Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical pr... 28 9.7
U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein. 28 9.7
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 34.7 bits (76), Expect = 0.085
Identities = 24/82 (29%), Positives = 26/82 (31%), Gaps = 4/82 (4%)
Frame = +3
Query: 360 PFXGPPPLXXPXXAPP---PXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P GPP P APP P +P PP F+P G PG P
Sbjct: 387 PSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAP 446
Query: 531 XXXXPPXP-XXGXKXXXNXPPG 593
PP P PPG
Sbjct: 447 PSGGPPGPFNPSGAPPSGGPPG 468
Score = 34.7 bits (76), Expect = 0.085
Identities = 24/82 (29%), Positives = 26/82 (31%), Gaps = 4/82 (4%)
Frame = +3
Query: 360 PFXGPPPLXXPXXAPP---PXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P GPP P APP P +P PP F+P G PG P
Sbjct: 402 PSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAP 461
Query: 531 XXXXPPXP-XXGXKXXXNXPPG 593
PP P PPG
Sbjct: 462 PSGGPPGPFNPSGAPPSGGPPG 483
Score = 34.7 bits (76), Expect = 0.085
Identities = 24/82 (29%), Positives = 26/82 (31%), Gaps = 4/82 (4%)
Frame = +3
Query: 360 PFXGPPPLXXPXXAPP---PXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P GPP P APP P +P PP F+P G PG P
Sbjct: 417 PSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAP 476
Query: 531 XXXXPPXP-XXGXKXXXNXPPG 593
PP P PPG
Sbjct: 477 PSGGPPGPFDPSGAPPSGGPPG 498
Score = 34.7 bits (76), Expect = 0.085
Identities = 24/82 (29%), Positives = 26/82 (31%), Gaps = 4/82 (4%)
Frame = +3
Query: 360 PFXGPPPLXXPXXAPP---PXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P GPP P APP P +P PP F+P G PG P
Sbjct: 432 PSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAP 491
Query: 531 XXXXPPXP-XXGXKXXXNXPPG 593
PP P PPG
Sbjct: 492 PSGGPPGPFNPSGAPPSGGPPG 513
Score = 34.3 bits (75), Expect = 0.11
Identities = 24/82 (29%), Positives = 25/82 (30%), Gaps = 4/82 (4%)
Frame = +3
Query: 360 PFXGPPPLXXPXXAPP---PXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P GPP P APP P +P PP F P G PG P
Sbjct: 177 PSGGPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSGGPPGPFNPSGAP 236
Query: 531 XXXXPPXP-XXGXKXXXNXPPG 593
PP P PPG
Sbjct: 237 PSGGPPGPFDPSGAPPSGGPPG 258
Score = 34.3 bits (75), Expect = 0.11
Identities = 24/82 (29%), Positives = 25/82 (30%), Gaps = 4/82 (4%)
Frame = +3
Query: 360 PFXGPPPLXXPXXAPP---PXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P GPP P APP P P PP F+P G PG P
Sbjct: 192 PSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAP 251
Query: 531 XXXXPPXP-XXGXKXXXNXPPG 593
PP P PPG
Sbjct: 252 PSGGPPGPFNPSGAPPSGGPPG 273
Score = 34.3 bits (75), Expect = 0.11
Identities = 24/82 (29%), Positives = 25/82 (30%), Gaps = 4/82 (4%)
Frame = +3
Query: 360 PFXGPPPLXXPXXAPP---PXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P GPP P APP P P PP F+P G PG P
Sbjct: 222 PSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAP 281
Query: 531 XXXXPPXP-XXGXKXXXNXPPG 593
PP P PPG
Sbjct: 282 PSGGPPGPFDPSGAPPSGGPPG 303
Score = 34.3 bits (75), Expect = 0.11
Identities = 24/82 (29%), Positives = 25/82 (30%), Gaps = 4/82 (4%)
Frame = +3
Query: 360 PFXGPPPLXXPXXAPP---PXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P GPP P APP P +P PP F P G PG P
Sbjct: 237 PSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAP 296
Query: 531 XXXXPPXP-XXGXKXXXNXPPG 593
PP P PPG
Sbjct: 297 PSGGPPGPFDPSGAQPSGGPPG 318
Score = 34.3 bits (75), Expect = 0.11
Identities = 24/82 (29%), Positives = 25/82 (30%), Gaps = 4/82 (4%)
Frame = +3
Query: 360 PFXGPPPLXXPXXAPP---PXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P GPP P APP P P PP F+P G PG P
Sbjct: 312 PSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAP 371
Query: 531 XXXXPPXP-XXGXKXXXNXPPG 593
PP P PPG
Sbjct: 372 PSGGPPGPFDPSGAPPSGGPPG 393
Score = 34.3 bits (75), Expect = 0.11
Identities = 24/82 (29%), Positives = 25/82 (30%), Gaps = 4/82 (4%)
Frame = +3
Query: 360 PFXGPPPLXXPXXAPP---PXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P GPP P APP P +P PP F P G PG P
Sbjct: 327 PSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAP 386
Query: 531 XXXXPPXP-XXGXKXXXNXPPG 593
PP P PPG
Sbjct: 387 PSGGPPGPFDPSGAPPSGGPPG 408
Score = 33.9 bits (74), Expect = 0.15
Identities = 24/82 (29%), Positives = 25/82 (30%), Gaps = 4/82 (4%)
Frame = +3
Query: 360 PFXGPPPLXXPXXAPP---PXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P GPP L P APP P P PP F+P G G P
Sbjct: 162 PSGGPPGLFDPSGAPPSGGPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSGAP 221
Query: 531 XXXXPPXP-XXGXKXXXNXPPG 593
PP P PPG
Sbjct: 222 PSGGPPGPFNPSGAPPSGGPPG 243
Score = 33.9 bits (74), Expect = 0.15
Identities = 24/82 (29%), Positives = 24/82 (29%), Gaps = 4/82 (4%)
Frame = +3
Query: 360 PFXGPPPLXXPXXAPP---PXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P GPP P APP P P PP F P G PG P
Sbjct: 252 PSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAQ 311
Query: 531 XXXXPPXP-XXGXKXXXNXPPG 593
PP P PPG
Sbjct: 312 PSGGPPGPFNPSGAPPSGGPPG 333
Score = 33.9 bits (74), Expect = 0.15
Identities = 24/82 (29%), Positives = 24/82 (29%), Gaps = 4/82 (4%)
Frame = +3
Query: 360 PFXGPPPLXXPXXAPP---PXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P GPP P APP P P PP F P G PG P
Sbjct: 267 PSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAQPSGGPPGPFNPSGAP 326
Query: 531 XXXXPPXP-XXGXKXXXNXPPG 593
PP P PPG
Sbjct: 327 PSGGPPGPFDPSGAPPSGGPPG 348
Score = 33.9 bits (74), Expect = 0.15
Identities = 24/82 (29%), Positives = 24/82 (29%), Gaps = 4/82 (4%)
Frame = +3
Query: 360 PFXGPPPLXXPXXAPP---PXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P GPP P APP P P PP F P G PG P
Sbjct: 342 PSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAP 401
Query: 531 XXXXPPXP-XXGXKXXXNXPPG 593
PP P PPG
Sbjct: 402 PSGGPPGPFNPSGAPPSGGPPG 423
Score = 33.9 bits (74), Expect = 0.15
Identities = 24/82 (29%), Positives = 24/82 (29%), Gaps = 4/82 (4%)
Frame = +3
Query: 360 PFXGPPPLXXPXXAPP---PXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P GPP P APP P P PP F P G PG P
Sbjct: 357 PSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAP 416
Query: 531 XXXXPPXP-XXGXKXXXNXPPG 593
PP P PPG
Sbjct: 417 PSGGPPGPFNPSGAPPSGGPPG 438
Score = 33.9 bits (74), Expect = 0.15
Identities = 21/68 (30%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Frame = +3
Query: 360 PFXGPPPLXXPXXAPP---PXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P GPP P APP P +P PP F P G PG P
Sbjct: 447 PSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAP 506
Query: 531 XXXXPPXP 554
PP P
Sbjct: 507 PSGGPPGP 514
Score = 33.9 bits (74), Expect = 0.15
Identities = 21/68 (30%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Frame = +3
Query: 360 PFXGPPPLXXPXXAPP---PXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P GPP P APP P P PP F+P G PG P
Sbjct: 462 PSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAP 521
Query: 531 XXXXPPXP 554
PP P
Sbjct: 522 PSGMPPVP 529
Score = 31.1 bits (67), Expect = 1.0
Identities = 23/82 (28%), Positives = 24/82 (29%), Gaps = 4/82 (4%)
Frame = +3
Query: 360 PFXGPPPLXXPXXAPP---PXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P GP P APP P +P PP F P G PG P
Sbjct: 207 PSGGPTGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAP 266
Query: 531 XXXXPPXP-XXGXKXXXNXPPG 593
PP P PPG
Sbjct: 267 PSGGPPGPFDPSGAPPSGGPPG 288
Score = 31.1 bits (67), Expect = 1.0
Identities = 23/82 (28%), Positives = 24/82 (29%), Gaps = 4/82 (4%)
Frame = +3
Query: 360 PFXGPPPLXXPXXAPP---PXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P GPP P A P P +P PP F P G PG P
Sbjct: 297 PSGGPPGPFDPSGAQPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAP 356
Query: 531 XXXXPPXP-XXGXKXXXNXPPG 593
PP P PPG
Sbjct: 357 PSGGPPGPFDPSGAPPSGGPPG 378
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 34.7 bits (76), Expect = 0.085
Identities = 22/78 (28%), Positives = 22/78 (28%)
Frame = +2
Query: 374 PPPFXPXXGXPPPXXXXXXXXXXXXXXXXXIFPXXXXXXKRXPXXFXSPPKXXXXXPPPP 553
PP P G PPP P P PP PPPP
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775
Query: 554 PXGGKKXXKFXPXXPLFF 607
P GG K P P F
Sbjct: 776 PPGGFKGGPPPPPPPGMF 793
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/65 (29%), Positives = 19/65 (29%)
Frame = +3
Query: 360 PFXGPPPLXXPXXAPPPXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKXXXX 539
P G PP P PP G P PP P KG P PP
Sbjct: 737 PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPM 796
Query: 540 XPPXP 554
P P
Sbjct: 797 APVIP 801
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/82 (29%), Positives = 24/82 (29%)
Frame = +3
Query: 360 PFXGPPPLXXPXXAPPPXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKXXXX 539
P G PP P PP G P PP P PG PP
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP---PPGGCPPP------ 771
Query: 540 XPPXPXXGXKXXXNXPPGXXFF 605
PP P G K PP F
Sbjct: 772 PPPPPPGGFKGGPPPPPPPGMF 793
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = +3
Query: 297 PPXKTXPXFWXKIXWXFXPXXPFXGPPPLXXPXXAPPPXXGXSPXNFPP 443
PP P I P P G PP+ PPP G P PP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 34.7 bits (76), Expect = 0.085
Identities = 22/78 (28%), Positives = 22/78 (28%)
Frame = +2
Query: 374 PPPFXPXXGXPPPXXXXXXXXXXXXXXXXXIFPXXXXXXKRXPXXFXSPPKXXXXXPPPP 553
PP P G PPP P P PP PPPP
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775
Query: 554 PXGGKKXXKFXPXXPLFF 607
P GG K P P F
Sbjct: 776 PPGGFKGGPPPPPPPGMF 793
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/65 (29%), Positives = 19/65 (29%)
Frame = +3
Query: 360 PFXGPPPLXXPXXAPPPXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKXXXX 539
P G PP P PP G P PP P KG P PP
Sbjct: 737 PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPM 796
Query: 540 XPPXP 554
P P
Sbjct: 797 APVIP 801
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/82 (29%), Positives = 24/82 (29%)
Frame = +3
Query: 360 PFXGPPPLXXPXXAPPPXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKXXXX 539
P G PP P PP G P PP P PG PP
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP---PPGGCPPP------ 771
Query: 540 XPPXPXXGXKXXXNXPPGXXFF 605
PP P G K PP F
Sbjct: 772 PPPPPPGGFKGGPPPPPPPGMF 793
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = +3
Query: 297 PPXKTXPXFWXKIXWXFXPXXPFXGPPPLXXPXXAPPPXXGXSPXNFPP 443
PP P I P P G PP+ PPP G P PP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 34.7 bits (76), Expect = 0.085
Identities = 22/78 (28%), Positives = 22/78 (28%)
Frame = +2
Query: 374 PPPFXPXXGXPPPXXXXXXXXXXXXXXXXXIFPXXXXXXKRXPXXFXSPPKXXXXXPPPP 553
PP P G PPP P P PP PPPP
Sbjct: 299 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 358
Query: 554 PXGGKKXXKFXPXXPLFF 607
P GG K P P F
Sbjct: 359 PPGGFKGGPPPPPPPGMF 376
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/65 (29%), Positives = 19/65 (29%)
Frame = +3
Query: 360 PFXGPPPLXXPXXAPPPXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKXXXX 539
P G PP P PP G P PP P KG P PP
Sbjct: 320 PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPM 379
Query: 540 XPPXP 554
P P
Sbjct: 380 APVIP 384
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/82 (29%), Positives = 24/82 (29%)
Frame = +3
Query: 360 PFXGPPPLXXPXXAPPPXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKXXXX 539
P G PP P PP G P PP P PG PP
Sbjct: 304 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP---PPGGCPPP------ 354
Query: 540 XPPXPXXGXKXXXNXPPGXXFF 605
PP P G K PP F
Sbjct: 355 PPPPPPGGFKGGPPPPPPPGMF 376
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = +3
Query: 297 PPXKTXPXFWXKIXWXFXPXXPFXGPPPLXXPXXAPPPXXGXSPXNFPP 443
PP P I P P G PP+ PPP G P PP
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 357
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.5 bits (73), Expect = 0.20
Identities = 23/80 (28%), Positives = 25/80 (31%)
Frame = +3
Query: 351 PXXPFXGPPPLXXPXXAPPPXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P P G PPL PPP SP PP P G PP +
Sbjct: 239 PPPPPKGSPPLAGSGSPPPPPAAGSPP--PPRTGSPP--PPPTGSPPPPPAGGSPPPPRA 294
Query: 531 XXXXPPXPXXGXKXXXNXPP 590
PP P G + PP
Sbjct: 295 GSPPPPPPPRGSPPTGSLPP 314
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 500 PXXFXSPPKXXXXXPPPPPXGG 565
P SPP PPPPP GG
Sbjct: 266 PPRTGSPPPPPTGSPPPPPAGG 287
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/80 (27%), Positives = 23/80 (28%)
Frame = +3
Query: 351 PXXPFXGPPPLXXPXXAPPPXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P P PPP PPP G P PP SP G PP
Sbjct: 273 PPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRG------SPPTGSLPPPQAG-GSPPPAG 325
Query: 531 XXXXPPXPXXGXKXXXNXPP 590
PP P + PP
Sbjct: 326 TGSPPPPPRQKRQAPERSPP 345
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.5 bits (73), Expect = 0.20
Identities = 23/80 (28%), Positives = 25/80 (31%)
Frame = +3
Query: 351 PXXPFXGPPPLXXPXXAPPPXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P P G PPL PPP SP PP P G PP +
Sbjct: 260 PPPPPKGSPPLAGSGSPPPPPAAGSPP--PPRTGSPP--PPPTGSPPPPPAGGSPPPPRA 315
Query: 531 XXXXPPXPXXGXKXXXNXPP 590
PP P G + PP
Sbjct: 316 GSPPPPPPPRGSPPTGSLPP 335
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 500 PXXFXSPPKXXXXXPPPPPXGG 565
P SPP PPPPP GG
Sbjct: 287 PPRTGSPPPPPTGSPPPPPAGG 308
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/80 (27%), Positives = 23/80 (28%)
Frame = +3
Query: 351 PXXPFXGPPPLXXPXXAPPPXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P P PPP PPP G P PP SP G PP
Sbjct: 294 PPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRG------SPPTGSLPPPQAG-GSPPPAG 346
Query: 531 XXXXPPXPXXGXKXXXNXPP 590
PP P + PP
Sbjct: 347 TGSPPPPPRQKRQAPERSPP 366
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.5 bits (73), Expect = 0.20
Identities = 23/80 (28%), Positives = 25/80 (31%)
Frame = +3
Query: 351 PXXPFXGPPPLXXPXXAPPPXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P P G PPL PPP SP PP P G PP +
Sbjct: 245 PPPPPKGSPPLAGSGSPPPPPAAGSPP--PPRTGSPP--PPPTGSPPPPPAGGSPPPPRA 300
Query: 531 XXXXPPXPXXGXKXXXNXPP 590
PP P G + PP
Sbjct: 301 GSPPPPPPPRGSPPTGSLPP 320
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 500 PXXFXSPPKXXXXXPPPPPXGG 565
P SPP PPPPP GG
Sbjct: 272 PPRTGSPPPPPTGSPPPPPAGG 293
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/80 (27%), Positives = 23/80 (28%)
Frame = +3
Query: 351 PXXPFXGPPPLXXPXXAPPPXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P P PPP PPP G P PP SP G PP
Sbjct: 279 PPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRG------SPPTGSLPPPQAG-GSPPPAG 331
Query: 531 XXXXPPXPXXGXKXXXNXPP 590
PP P + PP
Sbjct: 332 TGSPPPPPRQKRQAPERSPP 351
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 32.7 bits (71), Expect = 0.34
Identities = 24/89 (26%), Positives = 28/89 (31%), Gaps = 5/89 (5%)
Frame = +3
Query: 297 PPXKTXPXFWXKIXWXFXPXXPFXGPPPLXXPXXAPPPXXGXSPXN-----FPPXXXXXX 461
PP T F + P P GPPP PP G P +PP
Sbjct: 109 PPMPTPMPFPQHFPFPGMPPMP-SGPPPPSMAYGMPPMPSGMMPPRGMPGAYPPPRGYPP 167
Query: 462 XFSPXXXXXXKGXPGFXXPPQKXXXXXPP 548
+P G PG PP+ PP
Sbjct: 168 APAPGVYMPPPGMPGAYPPPRMPIGHGPP 196
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 32.7 bits (71), Expect = 0.34
Identities = 24/89 (26%), Positives = 28/89 (31%), Gaps = 5/89 (5%)
Frame = +3
Query: 297 PPXKTXPXFWXKIXWXFXPXXPFXGPPPLXXPXXAPPPXXGXSPXN-----FPPXXXXXX 461
PP T F + P P GPPP PP G P +PP
Sbjct: 109 PPMPTPMPFPQHFPFPGMPPMP-SGPPPPSMAYGMPPMPSGMMPPRGMPGAYPPPRGYPP 167
Query: 462 XFSPXXXXXXKGXPGFXXPPQKXXXXXPP 548
+P G PG PP+ PP
Sbjct: 168 APAPGVYMPPPGMPGAYPPPRMPIGHGPP 196
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 31.9 bits (69), Expect = 0.60
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 750 PPLXPPPXXXPPPXXFFSPPP 812
PP PPP PPP + PPP
Sbjct: 132 PPPPPPPPHYPPPPPHYPPPP 152
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 750 PPLXPPPXXXPPPXXFFSPPP 812
PP PPP PPP + PPP
Sbjct: 133 PPPPPPPHYPPPPPHYPPPPP 153
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 31.5 bits (68), Expect = 0.79
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 738 FFXXPPLXPPPXXXPPPXXFFSPPP 812
F PP+ PPP PPP PPP
Sbjct: 55 FCPPPPMCPPPPPPPPPPMCPPPPP 79
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 750 PPLXPPPXXXPPPXXFFSPPP 812
PP PPP PPP +PPP
Sbjct: 4 PPPPPPPPPPPPPPAASAPPP 24
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 750 PPLXPPPXXXPPPXXFFSPPP 812
PP PPP PPP S PP
Sbjct: 3 PPPPPPPPPPPPPPPAASAPP 23
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 750 PPLXPPPXXXPPPXXFFSPPP 812
PP PPP PPP +PPP
Sbjct: 4 PPPPPPPPPPPPPPAASAPPP 24
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 750 PPLXPPPXXXPPPXXFFSPPP 812
PP PPP PPP S PP
Sbjct: 3 PPPPPPPPPPPPPPPAASAPP 23
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -3
Query: 453 PFFWGENXX-GXPXXGGGXPKXGXKGGG 373
PFF G + G P GGG P G GGG
Sbjct: 34 PFFGGRSGGWGRPGWGGGGPGWGRGGGG 61
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 811 GGGEKXXXGGGXXXGGGXRGG 749
GGG+ GGG GGG RGG
Sbjct: 153 GGGDWGGNGGGGRGGGGGRGG 173
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 4.2
Identities = 24/86 (27%), Positives = 25/86 (29%), Gaps = 6/86 (6%)
Frame = +3
Query: 351 PXXPFXGPPPLXXPXXAPPPXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPP--- 521
P P P P P PPP G P PP P G PG PP
Sbjct: 272 PMPPPMPPTPGMTPRPPPPPSSGMWPPPPPP--------PPGRTPGPPGMPGMPPPPPPS 323
Query: 522 ---QKXXXXXPPXPXXGXKXXXNXPP 590
PP P G + PP
Sbjct: 324 RFGPPGMGGMPPPPPPGMRYPGGMPP 349
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/75 (28%), Positives = 21/75 (28%), Gaps = 1/75 (1%)
Frame = +3
Query: 369 GPPPLXXPXXAPPPXXGXSPXNFPPXXXXXXXFSPXXXXXX-KGXPGFXXPPQKXXXXXP 545
G PP P PP G P PP P PG PP P
Sbjct: 315 GMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPP---PPSRP 371
Query: 546 PXPXXGXKXXXNXPP 590
P P G PP
Sbjct: 372 PAPPSGHGMIPPPPP 386
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.2
Identities = 24/86 (27%), Positives = 25/86 (29%), Gaps = 6/86 (6%)
Frame = +3
Query: 351 PXXPFXGPPPLXXPXXAPPPXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPP--- 521
P P P P P PPP G P PP P G PG PP
Sbjct: 282 PMPPPMPPTPGMTPRPPPPPSSGMWPPPPPP--------PPGRTPGPPGMPGMPPPPPPS 333
Query: 522 ---QKXXXXXPPXPXXGXKXXXNXPP 590
PP P G + PP
Sbjct: 334 RFGPPGMGGMPPPPPPGMRYPGGMPP 359
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/75 (28%), Positives = 21/75 (28%), Gaps = 1/75 (1%)
Frame = +3
Query: 369 GPPPLXXPXXAPPPXXGXSPXNFPPXXXXXXXFSPXXXXXX-KGXPGFXXPPQKXXXXXP 545
G PP P PP G P PP P PG PP P
Sbjct: 325 GMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPP---PPSRP 381
Query: 546 PXPXXGXKXXXNXPP 590
P P G PP
Sbjct: 382 PAPPSGHGMIPPPPP 396
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/67 (29%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
Frame = +2
Query: 500 PXXFXSPPKXXXXXPPPPPXGGK-KXXKFXPXXPLFFFXXXXKXXXXPXKXF--XXXKXX 670
P F PP PPPP G+ F P P F P
Sbjct: 292 PFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPYPP 351
Query: 671 FFXPPPP 691
FF PPPP
Sbjct: 352 FFPPPPP 358
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/67 (29%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
Frame = +2
Query: 500 PXXFXSPPKXXXXXPPPPPXGGK-KXXKFXPXXPLFFFXXXXKXXXXPXKXF--XXXKXX 670
P F PP PPPP G+ F P P F P
Sbjct: 292 PFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPYPP 351
Query: 671 FFXPPPP 691
FF PPPP
Sbjct: 352 FFPPPPP 358
>AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical
protein H28G03.2c protein.
Length = 275
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/52 (28%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Frame = +3
Query: 294 PPPXKTXPXF--WXKIXWXFXPXXPFXGPPPLXXPXXAPPPXXGXSPXNFPP 443
PPP P + P GPPP P PPP + PP
Sbjct: 101 PPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVPPPTSSAAAPIVPP 152
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 750 PPLXPPPXXXPPPXXFFSPP 809
PP PPP PPP PP
Sbjct: 90 PPFMPPPIGMPPPPLGMPPP 109
>AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical
protein H28G03.2b protein.
Length = 298
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/52 (28%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Frame = +3
Query: 294 PPPXKTXPXF--WXKIXWXFXPXXPFXGPPPLXXPXXAPPPXXGXSPXNFPP 443
PPP P + P GPPP P PPP + PP
Sbjct: 124 PPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVPPPTSSAAAPIVPP 175
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 750 PPLXPPPXXXPPPXXFFSPP 809
PP PPP PPP PP
Sbjct: 113 PPFMPPPIGMPPPPLGMPPP 132
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/52 (28%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Frame = +3
Query: 294 PPPXKTXPXF--WXKIXWXFXPXXPFXGPPPLXXPXXAPPPXXGXSPXNFPP 443
PPP P + P GPPP P PPP + PP
Sbjct: 374 PPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVPPPTSSAAAPIVPP 425
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 750 PPLXPPPXXXPPPXXFFSPP 809
PP PPP PPP PP
Sbjct: 363 PPFMPPPIGMPPPPLGMPPP 382
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 28.7 bits (61), Expect = 5.6
Identities = 23/87 (26%), Positives = 26/87 (29%), Gaps = 10/87 (11%)
Frame = +3
Query: 372 PPPLXXPXXAPPPXXGXSPXNFPPXXXXXXXF-------SPXXXXXXKGXP--GFXXPPQ 524
PP P PPP G P F P F +P P F PP+
Sbjct: 716 PPAPPPPGVGPPPPQGIPPMGFDPNKPPPPMFQQGFNAGAPPPPFGRGAGPMSSFPPPPR 775
Query: 525 KXXXXXPPXP-XXGXKXXXNXPPGXXF 602
PP P G + PP F
Sbjct: 776 GGMHHMPPPPSFRGGRGGHGGPPPPHF 802
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/44 (31%), Positives = 15/44 (34%)
Frame = +3
Query: 681 PPPPXXKKXXXXFLXQKKXFFXXPPLXPPPXXXPPPXXFFSPPP 812
PPPP PP+ PP PPP PPP
Sbjct: 326 PPPPMKLDPSPQPAATPVEITEIPPIISPPAPPPPPPPPPPPPP 369
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 28.3 bits (60), Expect = 7.4
Identities = 43/182 (23%), Positives = 49/182 (26%), Gaps = 10/182 (5%)
Frame = +3
Query: 294 PPPXKTXPXFWXKIXWXFXPXXPFXGPPPLXXPXX--APPPXXGXSPXNFPPXXXXXXXF 467
PPP T P F P F PPP APPP S + F
Sbjct: 230 PPPNATIPSF-PTSNAASPPVQEFAPPPPQQQQQQFQAPPPPMA-SHSSISSTPVQQQGF 287
Query: 468 SPXXXXXX---KGXP----GFXXPPQKXXXXXPPXPXXGXKXXXNXPPGXXFFFFXGXXK 626
+P G P G+ P Q+ P P + PP
Sbjct: 288 APPQQFGGPPPSGPPSEYGGYAPPQQQQQQFGAPPPQGAPQQGFGAPPQGPPQGGPPQGS 347
Query: 627 XXXXPXKXFXXXKX-FFXXPPPPXXKKXXXXFLXQKKXFFXXPPLXPPPXXXPPPXXFFS 803
P + F F PPPP F PP PP PP F
Sbjct: 348 FGAPPPQQFHAPSPQSFGGPPPPVSSAPGN---------FAPPPQSGPPGAFAPPPSAFG 398
Query: 804 PP 809
P
Sbjct: 399 AP 400
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/54 (33%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Frame = +3
Query: 369 GPPPLXXPXXAPPPXX-GXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQK 527
GP P P A PP G SP P P G PG PP K
Sbjct: 224 GPGPAGPPGPAGPPGPDGASPTAAPGAAGPPGPPGPAGAPGPDGNPGTAGPPGK 277
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/71 (28%), Positives = 21/71 (29%)
Frame = +3
Query: 351 PXXPFXGPPPLXXPXXAPPPXXGXSPXNFPPXXXXXXXFSPXXXXXXKGXPGFXXPPQKX 530
P F PPP+ PPP G P PP P G PP
Sbjct: 59 PKPSFFIPPPVPNGFIPPPPGPGGIP---PPPPMFAGGIPPPPPMMG----GIPPPPPMF 111
Query: 531 XXXXPPXPXXG 563
PP P G
Sbjct: 112 GAPPPPPPPSG 122
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
protein R08B4.1b protein.
Length = 1160
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 811 GGGEKXXXGGGXXXGGGXRGG 749
GGG GGG GGG GG
Sbjct: 813 GGGSNSNSGGGGGNGGGGNGG 833
>Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical
protein R08B4.1a protein.
Length = 1137
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 811 GGGEKXXXGGGXXXGGGXRGG 749
GGG GGG GGG GG
Sbjct: 790 GGGSNSNSGGGGGNGGGGNGG 810
>U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein.
Length = 790
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 811 GGGEKXXXGGGXXXGGGXRGG 749
GGG GGG GGG GG
Sbjct: 443 GGGSNSNSGGGGGNGGGGNGG 463
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,204,530
Number of Sequences: 27780
Number of extensions: 278929
Number of successful extensions: 2512
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1843
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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