Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_B06
(1313 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.029
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.62
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.82
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.1
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 29 1.9
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 5.7
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.7 bits (76), Expect = 0.029
Identities = 28/102 (27%), Positives = 31/102 (30%)
Frame = +2
Query: 905 RPPPPXXCGXPPXXSXXXXPXRPSXVXSXXLPXPPXPPXXXXRPXGSXLPPPRXXXXPPS 1084
RPPPP PP P P S PP PP GS PP+ PP
Sbjct: 310 RPPPPP----PPSRRNRGKP--PIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363
Query: 1085 RXPPEXXXXXSXXSPPXRPXXXXXSPXPFPXXXXXXRPPSSP 1210
PP PP +P P P+ P
Sbjct: 364 -PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALP 404
Score = 33.1 bits (72), Expect = 0.088
Identities = 23/89 (25%), Positives = 26/89 (29%), Gaps = 2/89 (2%)
Frame = +1
Query: 1033 PXRLXPPAPXXXXXS--PXPXSPXXXRXXLXXXPATPTXXXXXLPXPXPXXXXXPPSPXX 1206
P R P P S P P P+ P LP P PPS
Sbjct: 396 PGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPI 455
Query: 1207 PPXXPNPXPXSXPPXXXGXXPPXXXTPSP 1293
P P P + P PP P+P
Sbjct: 456 APPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 32.7 bits (71), Expect = 0.12
Identities = 44/183 (24%), Positives = 51/183 (27%), Gaps = 20/183 (10%)
Frame = +2
Query: 722 PXPXXXXXPXXXXPXXPQXAXXXXXAPXX-RAAXXEAARXXRXXPGSXSSXPLXXGXXXR 898
P P P P + AP A ++ P S S R
Sbjct: 251 PAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKR 310
Query: 899 XXRPPPPXXC--GXPPXX------SXXXXPXRPSXVXSXXLPXPPX------PPXXXXRP 1036
PPPP G PP S P P + +P PP PP P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Query: 1037 XGSXLPPP----RXXXXPPSRXPPEXXXXXSXXSPP-XRPXXXXXSPXPFPXXXXXXRPP 1201
PPP R PP+ PP + PP P P P PP
Sbjct: 371 STGRQPPPLSSSRAVSNPPA-PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429
Query: 1202 SSP 1210
S P
Sbjct: 430 SLP 432
Score = 31.1 bits (67), Expect = 0.35
Identities = 21/81 (25%), Positives = 23/81 (28%), Gaps = 2/81 (2%)
Frame = +1
Query: 997 PXXXXAXTXXXPPXRLXPPAPXXXXXSPXPXSPXXXRXXLXXXPATPTXXXXXLPXP--X 1170
P A PP P P S P +P P P P P
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGM 463
Query: 1171 PXXXXXPPSPXXPPXXPNPXP 1233
P PP+ PP P P P
Sbjct: 464 PAAPPLPPAAPAPPPAPAPAP 484
Score = 29.9 bits (64), Expect = 0.82
Identities = 20/82 (24%), Positives = 23/82 (28%)
Frame = +2
Query: 851 PGSXSSXPLXXGXXXRXXRPPPPXXCGXPPXXSXXXXPXRPSXVXSXXLPXPPXPPXXXX 1030
PG + G R PP P PP P P + PP PP
Sbjct: 396 PGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPI 455
Query: 1031 RPXGSXLPPPRXXXXPPSRXPP 1096
P P P + PP
Sbjct: 456 APPLPAGMPAAPPLPPAAPAPP 477
Score = 27.1 bits (57), Expect = 5.7
Identities = 19/84 (22%), Positives = 24/84 (28%), Gaps = 1/84 (1%)
Frame = +1
Query: 1048 PPAPXXXXXSPXPXSPXXXRXXLXXXP-ATPTXXXXXLPXPXPXXXXXPPSPXXPPXXPN 1224
PP P P P P + P+ P PP+P PP P
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAP--PPAIPG 397
Query: 1225 PXPXSXPPXXXGXXPPXXXTPSPP 1296
+ PP P+PP
Sbjct: 398 RSAPALPPLGNASRTSTPPVPTPP 421
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.62
Identities = 18/60 (30%), Positives = 18/60 (30%)
Frame = +1
Query: 1114 LXXXPATPTXXXXXLPXPXPXXXXXPPSPXXPPXXPNPXPXSXPPXXXGXXPPXXXTPSP 1293
L P P P P P P P P P P PP G PP P P
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPI-----PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/51 (29%), Positives = 16/51 (31%)
Frame = +2
Query: 908 PPPPXXCGXPPXXSXXXXPXRPSXVXSXXLPXPPXPPXXXXRPXGSXLPPP 1060
PPPP P + P P P PP PP PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/51 (27%), Positives = 16/51 (31%)
Frame = +2
Query: 908 PPPPXXCGXPPXXSXXXXPXRPSXVXSXXLPXPPXPPXXXXRPXGSXLPPP 1060
PPPP P P+ + P PP P P PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.82
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +1
Query: 1159 PXPXPXXXXXPPSPXXPPXXPNPXPXSXPPXXXGXXPPXXXTP 1287
P P P PP P PP P P + PP P P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGP-PSAPPPPLPASSAPSVPNP 1746
Score = 27.1 bits (57), Expect = 5.7
Identities = 19/57 (33%), Positives = 20/57 (35%)
Frame = +1
Query: 1126 PATPTXXXXXLPXPXPXXXXXPPSPXXPPXXPNPXPXSXPPXXXGXXPPXXXTPSPP 1296
PA P P P+P PP P P S PP G PP P PP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSV-PPPPSAPPMPAG--PP--SAPPPP 1734
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 1.1
Identities = 26/129 (20%), Positives = 32/129 (24%), Gaps = 1/129 (0%)
Frame = +2
Query: 908 PPPPXXCGXPPXXSXXXX-PXRPSXVXSXXLPXPPXPPXXXXRPXGSXLPPPRXXXXPPS 1084
PP P G PP P P+ + +P P P P P+ P
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
Query: 1085 RXPPEXXXXXSXXSPPXRPXXXXXSPXPFPXXXXXXRPPSSPXXXXTXVQXXXXQXXXXX 1264
PP S P + P P P P V +
Sbjct: 1191 VPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVS 1250
Query: 1265 XPPXXXPXP 1291
P P P
Sbjct: 1251 TPRSSVPSP 1259
Score = 28.7 bits (61), Expect = 1.9
Identities = 21/91 (23%), Positives = 25/91 (27%), Gaps = 2/91 (2%)
Frame = +1
Query: 1030 PPXRLXPPAPXXXXXSPXPXSPXXXRXXLXXXPATPTXXXXXLPXPXPXXXXXPPSPXXP 1209
PP + AP + P P P P P P P+P
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGI 1091
Query: 1210 PXXPNPXPXSXPPXXXGXXPPXXXTPS--PP 1296
P P P + P P PS PP
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPP 1122
Score = 27.9 bits (59), Expect = 3.3
Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Frame = +1
Query: 1126 PATPTXXXXXLPXPXPXXXXXP-PSPXXPPXXPNPXPXSXP-PXXXGXXP-PXXXTPSPP 1296
P P P P P P P+P P P P + P P G P P +PP
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +1
Query: 1192 PSPXXPPXXPNPXPXSXPPXXXGXXPPXXXTPSPP 1296
P P PP P P P S PP PS P
Sbjct: 961 PRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAP 995
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 28.7 bits (61), Expect = 1.9
Identities = 25/102 (24%), Positives = 31/102 (30%), Gaps = 1/102 (0%)
Frame = +2
Query: 908 PPPPXXCGXPPXXSXXXXPXRPSXVXSXXLPXPPXPPXXXXRPXGSXLPP-PRXXXXPPS 1084
P PP P S P P + +P PP P P P P P
Sbjct: 575 PQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSV 634
Query: 1085 RXPPEXXXXXSXXSPPXRPXXXXXSPXPFPXXXXXXRPPSSP 1210
PP S P RP + P +PP++P
Sbjct: 635 PQPPAAPVVPEVPSVPQRP-----AVPVVPEAPSVPQPPAAP 671
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 5.7
Identities = 19/71 (26%), Positives = 22/71 (30%)
Frame = +1
Query: 1084 PXSPXXXRXXLXXXPATPTXXXXXLPXPXPXXXXXPPSPXXPPXXPNPXPXSXPPXXXGX 1263
P +P P T +P P P PP P P P+ P P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASA--PPIPSKAPPIPSSLPPPAQPAAPVK 182
Query: 1264 XPPXXXTPSPP 1296
PP PS P
Sbjct: 183 SPP--SAPSLP 191
Score = 27.1 bits (57), Expect = 5.7
Identities = 22/76 (28%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Frame = +2
Query: 998 PXPPXPPXXXXRPXGSXLPPPRXXXXPPS-----RXPPEXXXXXSXXSPPXRPXXXXXSP 1162
P PP P P + PPR PPS P + S PP +P SP
Sbjct: 128 PAPPTPQSELRPPTSA---PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
Query: 1163 XPFPXXXXXXRPPSSP 1210
P PP P
Sbjct: 185 PSAPSLPSAV-PPMPP 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.141 0.480
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,245,028
Number of Sequences: 5004
Number of extensions: 14398
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 719358436
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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