Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_B04
         (867 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           33   0.30 
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    30   2.8  
12_01_0816 + 7502669-7503145                                           29   4.8  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.4  
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029...    29   6.4  
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548...    28   8.4  
01_01_1212 + 9763949-9764412,9765183-9765252,9765356-9765457           28   8.4  

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 431 RKRHASRREKGGQVSGKRQGRKQESARGSFQGETPG 324
           R R   RR  GG+V+G+   R +   RG+++GE  G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274


>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = +3

Query: 228 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLF-PTL-PLTGYLSA 401
           CWR  +        T  D Q    +    +KD    P + PSC L+F P L PL   L A
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYA 342

Query: 402 F 404
           F
Sbjct: 343 F 343


>12_01_0816 + 7502669-7503145
          Length = 158

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 528 RRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERR 397
           R SG  +R V    PAW ER   + ++ +V  E+A      ERR
Sbjct: 8   RSSGEGDRPVARWWPAWQEREKESLESSAVEGERATAEVGSERR 51


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 60  PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 215
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>01_03_0179 +
           13500413-13500768,13502522-13502642,13502876-13502998,
           13504409-13504497,13504612-13504696,13504852-13505011,
           13505096-13505160,13505296-13505349,13505437-13505527,
           13505685-13505986,13506084-13506365,13506451-13506764,
           13506920-13507080,13507202-13507305,13507379-13507535,
           13507652-13507896,13507995-13508327,13508428-13508751,
           13508816-13508899,13509001-13509169,13509610-13509731,
           13510538-13510792,13511115-13511252
          Length = 1377

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 39  DLYLGALPLPRSLTRCARSFGCGERYQLTQR 131
           DL++G + +  +L   AR  G G RY+L++R
Sbjct: 286 DLHIGEMTVRETLAFSARCQGVGSRYELSRR 316


>06_03_1508 -
           30653967-30654245,30654342-30654631,30654773-30654841,
           30654854-30654921,30655016-30655492,30655578-30655874,
           30655974-30656824,30656917-30656990,30657270-30657292,
           30657709-30657772,30658098-30658370,30658511-30658587,
           30658686-30658912
          Length = 1022

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 271 QKSTLKSEVAKPDRTIKIPGV-SPWKLPRALSCFRPCRLPDTCPPFSLRE 417
           Q   L+  V  P RT+   G  + +  P  L+C  PC L   CP  +L +
Sbjct: 158 QNINLQDAVNFPSRTLDCRGCCAGFFCPHGLTCMIPCPLGAYCPESTLNK 207


>01_01_1212 + 9763949-9764412,9765183-9765252,9765356-9765457
          Length = 211

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +3

Query: 546 LESNPVRHDLSPLAAATGNRISRARYVRRCYRVL---EVXA*LXLHXKNSIXYLRSAET 713
           L  +P RH  SP AAA  +   R R     YRVL    + A   L  ++S  Y R++ +
Sbjct: 29  LRDHPDRHAHSPDAAARADAARRFRLASDAYRVLSDDRLRAEYDLRIRSSSFYSRASSS 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,281,594
Number of Sequences: 37544
Number of extensions: 542475
Number of successful extensions: 1663
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1662
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)