Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_B01
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   3.2  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    26   5.6  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    26   5.6  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   7.4  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    25   9.7  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   9.7  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   9.7  

>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +1

Query: 208 ESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEGDKYQISIHLPGYEQKDIN 387
           E   + + +W+++  +MQ  D   ++L   F  I N G++     Q +I L G +  ++ 
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKLR-TLLQNAIVLLGQQTTNVA 162

Query: 388 VKAKN 402
            K  N
Sbjct: 163 SKKLN 167


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 119 AAVSAAPQYYHGSSHWPYHHYDPLQXL 199
           A  +A PQYY     +P  HY P Q L
Sbjct: 502 ATDAAKPQYYIPKDPYPVPHYYPQQPL 528


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 145 LPWLVTLAVSPLRPPSXPYVRESMLDTHSLWSNLAN-EMQHLDNMMKELSLKFPSI 309
           LPWL+T      +  + P   + M+    LW    N  ++ LD  +++ SL  PS+
Sbjct: 160 LPWLITPPSEEEQKLAIPITSQQMVRLEELWRKDPNANLEDLDKPIEDDSL--PSV 213


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 253  EMQHLDNMMKELSLKFPSIINEGRV 327
            E+++L NM+ EL  KFP +   GR+
Sbjct: 1509 EVEYLVNMVDELLNKFPDVNFTGRI 1533


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 255 NATLGQHDEGAVVEVPQHYKRRTRGRRQVSDIYSPAWLRTERHQRESEKWSAD 413
           + TL +    ++  VP     RT  +R  SD  +  W+ + R Q+  E+W  D
Sbjct: 583 DGTLIESARNSIDAVPTDRLLRTL-KRLASDSRNIVWILSGRSQKFMEEWMGD 634


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 529  LKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTXSNVRDVD 651
            +K ++PE + +PV    +  ST  + +E E T  ++V   +
Sbjct: 908  IKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTE 948


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 523 FPLKQKQPEDSKRPVAEPTETTSTNVSRE 609
           F  K    +  K P  EPTE   +N+S E
Sbjct: 885 FSFKAFGIDSKKSPTPEPTEMAESNISEE 913


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,520
Number of Sequences: 5004
Number of extensions: 55586
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)