Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_B01
         (816 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0659 - 5021159-5021266,5021364-5021494,5021619-5021785,502...    33   0.27 
04_03_0672 + 18559984-18559986,18560096-18560569,18560666-185608...    31   0.83 
11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152...    29   3.3  
04_04_0347 + 24564589-24565296                                         29   4.4  
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265...    29   4.4  
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272...    28   7.7  
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258     28   7.7  

>01_01_0659 -
           5021159-5021266,5021364-5021494,5021619-5021785,
           5021950-5022065,5022226-5022381,5022570-5022678,
           5023153-5023262,5023807-5023992,5024077-5024667
          Length = 557

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 295 KFPSIINEGRVEGDKYQISIHLPGYEQKDINVK 393
           K   ++ E +VEGD Y + +H PG+  K ++V+
Sbjct: 216 KDDEVVKEEKVEGDGYSLGLHAPGFFDKVLHVE 248


>04_03_0672 +
           18559984-18559986,18560096-18560569,18560666-18560836,
           18561494-18561640
          Length = 264

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +1

Query: 82  HENDRLSVVRTAGGGLGRATVLPW-LVTLAVSPLRP--PSXPYVRESMLDTHSLWSNLAN 252
           H    LS  R  GGG+G A   P+ +V  + SP +P  PS P  R S + T    ++   
Sbjct: 80  HRRHSLSQQREVGGGIGSAPRSPYRMVHGSASPAQPNNPSKPKHRSSGMQTPERRASSEG 139

Query: 253 EMQH 264
             QH
Sbjct: 140 HGQH 143


>11_06_0645 -
           25814302-25814759,25814853-25815005,25815032-25815214,
           25815342-25815531,25815624-25815784,25816136-25816623,
           25817035-25817075
          Length = 557

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 307 IINEGRVEGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLP 465
           I ++G++EG +  I  H+P  E  D+ V + +   +   +S   H  K  N P
Sbjct: 351 ISSKGQLEGIQVVIDPHVPSVESVDMPVSSMDNSTLEVFSSQQQHSFKCNNTP 403


>04_04_0347 + 24564589-24565296
          Length = 235

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 89  MIALVLCGLLAAVSAAPQYYHGSSHWPY-HHYDP 187
           M  L+   LLAA SAA   +H  ++ PY HH+ P
Sbjct: 5   MSMLLASSLLAAASAARADHHSPAYAPYPHHHAP 38


>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
            2657523-2657649,2657731-2657812,2658172-2658196
          Length = 2621

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = +1

Query: 202  VRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEGDKYQIS 351
            +++++L+       LA+E+Q  D+++ EL  K  S  +  R+E  + ++S
Sbjct: 1298 LKQTLLEKSGELEKLAHELQSKDSLLIELEAKIKSYADADRIEALESELS 1347


>12_01_0357 +
           2720860-2721066,2721169-2721384,2721481-2723608,
           2723699-2724124,2724242-2724546,2724660-2724823,
           2724899-2724980
          Length = 1175

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 23/92 (25%), Positives = 36/92 (39%)
 Frame = +1

Query: 115 AGGGLGRATVLPWLVTLAVSPLRPPSXPYVRESMLDTHSLWSNLANEMQHLDNMMKELSL 294
           A GG G  + +   +    S  + P  PY  +SML  H         MQ L N M+    
Sbjct: 726 ARGGKGTRSGISNDLVKGGSLQQAPQHPYGPDSMLPQHMRQPGHMPYMQGLPNQMRPPKH 785

Query: 295 KFPSIINEGRVEGDKYQISIHLPGYEQKDINV 390
            FP   N        ++++  +PG  Q  + +
Sbjct: 786 SFPE--NSRPPMQQPFEMAPRVPGPNQNQMQI 815


>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
          Length = 874

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 538 KQPEDSKRPVAEPTETTSTNVSREEME 618
           +QP  SKRP AE T TT++   ++ +E
Sbjct: 696 EQPHRSKRPWAETTTTTTSGRDQDHLE 722


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,431,649
Number of Sequences: 37544
Number of extensions: 388370
Number of successful extensions: 1092
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)