Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_A24
(878 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988... 32 0.53
03_06_0471 + 34169562-34169892,34170121-34170347 31 0.92
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 31 1.6
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 30 2.1
04_01_0060 - 607615-607706,608497-608531,609283-609360,610402-61... 29 4.9
02_04_0382 - 22501041-22501279,22501717-22501810 29 4.9
07_03_1136 + 24218601-24218734,24218769-24219906 29 6.5
05_01_0346 - 2710420-2710683,2711595-2711672,2711861-2711888,271... 29 6.5
02_01_0143 + 1030081-1030587,1032106-1032114 29 6.5
01_01_0347 + 2765517-2767109,2767214-2767228 29 6.5
>05_05_0156 + 22792783-22793410,22797153-22797227,22797644-22798879,
22798947-22799155,22799240-22800209,22800395-22800465
Length = 1062
Score = 32.3 bits (70), Expect = 0.53
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = -1
Query: 221 AVSIRVVVFGRINDVRAVVNRFVAVSLSVGHSQQSEDENHEEFHFYMITSYHRRK 57
A I +++G ++D ++F+ +S QS+DEN + H + +YH +K
Sbjct: 985 ACDIIRILYGEVHDHSPFDDKFLPLSFDAQIDSQSDDENDKSGHGRIKGNYHSKK 1039
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 31.5 bits (68), Expect = 0.92
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +3
Query: 153 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFPG 302
Y P P PP Y P+ GY P GAY +P + P +PG
Sbjct: 56 YPPAGGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYPG 102
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = +3
Query: 153 YEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDRPQGRPYFKPTPFPGARG 311
Y P + P V PP Y P +G P N + Y + P GRP P P GA G
Sbjct: 394 YAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYGAGG 448
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +3
Query: 141 QGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPF 296
QG Y+P R PP+ P Y P G Y +PQG+PY P P+
Sbjct: 246 QGETYQPQPQRE--TYPPQ---PQVQPYPPKPQGQPYPPQPQGQPY-PPQPY 291
>04_01_0060 -
607615-607706,608497-608531,609283-609360,610402-610550,
610639-610730,611202-611280,611774-612150,613016-613226
Length = 370
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -2
Query: 835 GGGXXGSXPGGXXGGGXSSXXRKXXGPPNRQTAF 734
GGG GS GG GGG G NR AF
Sbjct: 3 GGGGAGSSTGGSGGGGGREGDWDCGGCGNRNYAF 36
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 29.1 bits (62), Expect = 4.9
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Frame = +3
Query: 96 FFMIFVLALLAMAN-AQGNGYEPIDNRPYIVNPPK----DYNPNGNGYEPIDNGAYYVDR 260
F ++ A +A A +G P ++ + PP D P+ + Y+P + YY D
Sbjct: 16 FALLLAAAFVASAEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYYDPPHSPDYY-DP 74
Query: 261 PQGRPYFKPTPFPGARGG 314
P Y+ P P P GG
Sbjct: 75 PPSPDYYDPPPSPYYGGG 92
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -2
Query: 835 GGGXXGSXPGGXXGGGXSSXXRKXXGPPNR 746
GGG G PGG GGG G P R
Sbjct: 191 GGGGPGRAPGGGGGGGGLGGGGGEGGAPER 220
>05_01_0346 -
2710420-2710683,2711595-2711672,2711861-2711888,
2711973-2712022,2712112-2712165,2712240-2712281,
2712583-2712646,2713831-2713851,2714310-2714479,
2714746-2714910
Length = 311
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -2
Query: 853 TRXAXLGGGXXGSXPGGXXGGGXSSXXRKXXGPPNRQTAFP 731
T A +GGG G GG G G + GPP ++ P
Sbjct: 4 TDGAGVGGGGGGVGGGGDGGSGSDDDEYELSGPPIELSSTP 44
>02_01_0143 + 1030081-1030587,1032106-1032114
Length = 171
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 717 PPTPPGXAVCLLGGPXXF 770
PP PP AVCL+GG F
Sbjct: 61 PPPPPRVAVCLVGGARRF 78
>01_01_0347 + 2765517-2767109,2767214-2767228
Length = 535
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -2
Query: 835 GGGXXGSXPGGXXGGGXSSXXRKXXGPPNRQTAFP 731
GGG G G GGG R+ P R++A P
Sbjct: 38 GGGGGGGSTGAGGGGGGGGGDRELFIIPRRESAHP 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,239,011
Number of Sequences: 37544
Number of extensions: 361613
Number of successful extensions: 1819
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1651
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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