Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_A19
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219... 31 0.68
09_02_0603 - 11150739-11150746,11150791-11151340 31 0.68
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 1.6
03_01_0023 + 198414-198968 29 2.7
06_02_0120 + 12055076-12055175,12055322-12055725 29 3.6
03_05_0541 + 25381403-25382077,25382555-25383904,25386267-253864... 29 3.6
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 4.8
03_01_0515 - 3864796-3865425 28 6.3
07_03_0177 - 14770777-14772045 28 8.4
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 28 8.4
>12_01_0292 +
2193309-2193338,2193565-2193640,2193744-2195203,
2195479-2195505,2195794-2196024,2196523-2196692,
2197278-2197421,2198036-2198083,2198503-2198566
Length = 749
Score = 31.5 bits (68), Expect = 0.68
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = -2
Query: 462 GGGXXKXGGGXXNPISKXXGLGXPGSGNFEPXXXGFGGNKXXAQXGG 322
GGG K GGG P + G G GN GG Q GG
Sbjct: 294 GGGNGKNGGGGGQPNNAKGGGAPNGGGNHPAQGKKGGGGGGGGQGGG 340
>09_02_0603 - 11150739-11150746,11150791-11151340
Length = 185
Score = 31.5 bits (68), Expect = 0.68
Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +2
Query: 347 FPPNPLXXGSKF---PEPGXPKPXXLEMGFXXPPPXFXXPPP 463
FPP P GS F P+ G P P L F PPP PPP
Sbjct: 43 FPPPP-PPGSTFVPLPQSGVPPPPPLG-SFFVPPPQSRVPPP 82
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +2
Query: 350 PPNPLXXGSKFPEPGXPKPXXLEMGFXXPPPXFXXPPPXFXXXXGXP 490
PP PL G K P P P P PP PPP G P
Sbjct: 751 PPPPLMTGKKAPAPPPPPPQ------APKPPGTVPPPPPLHGASGRP 791
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +2
Query: 353 PNPLXXGSKFPEPGXPKPXXLEMGFXXPPPXFXXPPP 463
P+P P P P P + F PPP PPP
Sbjct: 537 PSPTAAAPPPPPPPPPPPSGNKPAFSPPPPPPPPPPP 573
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +2
Query: 350 PPNPLXXGSKFPEPGXPKPXXLEMGFXXPPPXFXXPPP 463
PP P+ P P P P L PPP PPP
Sbjct: 607 PPPPILPNRSVPPP-PPPPPPLPNHSVLPPPPPPPPPP 643
>03_01_0023 + 198414-198968
Length = 184
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/54 (33%), Positives = 18/54 (33%)
Frame = -2
Query: 462 GGGXXKXGGGXXNPISKXXGLGXPGSGNFEPXXXGFGGNKXXAQXGG*XXNRXP 301
GGG GGG G G GSG G GG GG R P
Sbjct: 48 GGGGRGGGGGSGGGSGGGGGSGGGGSGGGGSGGGGSGGGGGGGSGGGGGGGRCP 101
>06_02_0120 + 12055076-12055175,12055322-12055725
Length = 167
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = -2
Query: 462 GGGXXKXGGGXXNPISKXXGLGXPGSGNFEPXXXGFGGNKXXAQXGG 322
GG GGG +P G G PG G G+GG GG
Sbjct: 99 GGSGPGYGGGYGSP-GYGGGYGSPGYGGGSGYGGGYGGGYGGGYGGG 144
>03_05_0541 +
25381403-25382077,25382555-25383904,25386267-25386402,
25386642-25387126
Length = 881
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = +2
Query: 323 PPXWAXXLFPPNPLXXGSKFPEPGXPKPXXLEMGFXXPPPXFXXPPP 463
PP A L P PL K + G P+ + + PPP P P
Sbjct: 158 PPNQAHCLRPHKPLSECGKQRQFGIPRNGGMLLAIEPPPPPISPPMP 204
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +2
Query: 353 PNPLXXGSKFPEPGXPKPXXLEMGFXXPPPXFXXPPP 463
P P P PG P P + F PP PPP
Sbjct: 48 PPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPP 84
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +2
Query: 323 PPXWAXXLFPPNPLXXGSKFPEPGXPKPXXLEMGFXXPPPXFXXPPP 463
PP A L PP P P P P PPP PPP
Sbjct: 62 PPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPP 108
>07_03_0177 - 14770777-14772045
Length = 422
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = -2
Query: 462 GGGXXKXGGGXXNPISKXXGLGXPGSGNFEPXXXGFGGNKXXAQXGG 322
GGG GGG I K GLG G G GFG GG
Sbjct: 229 GGGGLGGGGGLGGGIGKGGGLGG-GIGKGGGLGGGFGKGGGLGGGGG 274
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +2
Query: 350 PPNPLXXGSKFPEPGXPKPXXLEMGFXXPPPXFXXPPP 463
PP P + P P P P G PPP PPP
Sbjct: 322 PPPPAHPAAPAPPPPAPSPSAAGAGSGPPPP----PPP 355
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,108,148
Number of Sequences: 37544
Number of extensions: 329982
Number of successful extensions: 864
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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