Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_A18
         (1058 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.52 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    29   0.83 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.83 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.83 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   0.96 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    23   1.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   1.8  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   3.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   5.4  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +2

Query: 779 PPPPPPPPP 805
           PPPPPPPPP
Sbjct: 945 PPPPPPPPP 953



 Score = 25.8 bits (54), Expect(2) = 0.52
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 748 FXPPPPPPP 722
           F PPPPPPP
Sbjct: 944 FPPPPPPPP 952



 Score = 23.4 bits (48), Expect(2) = 2.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 779 PPPPPPPP 802
           P PPPPPP
Sbjct: 905 PTPPPPPP 912



 Score = 22.6 bits (46), Expect(2) = 2.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 782 PPPPPPPP 805
           PPPPPP P
Sbjct: 907 PPPPPPLP 914



 Score = 22.6 bits (46), Expect(2) = 0.52
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 613 PPPPPPKXXIIXPXXG 566
           PPPPPP   ++    G
Sbjct: 945 PPPPPPPPPLVSAAGG 960


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +2

Query: 779 PPPPPPPPP 805
           PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314



 Score = 23.8 bits (49), Expect(2) = 5.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 742 PPPPPPP 722
           PPPPPPP
Sbjct: 306 PPPPPPP 312



 Score = 23.8 bits (49), Expect(2) = 5.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 742 PPPPPPP 722
           PPPPPPP
Sbjct: 307 PPPPPPP 313



 Score = 21.0 bits (42), Expect(2) = 5.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 613 PPPPPP 596
           PPPPPP
Sbjct: 308 PPPPPP 313



 Score = 21.0 bits (42), Expect(2) = 5.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 613 PPPPPP 596
           PPPPPP
Sbjct: 309 PPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +2

Query: 779 PPPPPPPPP 805
           PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 779 PPPPPPPPP 805
           P PPPPPPP
Sbjct: 236 PAPPPPPPP 244



 Score = 24.6 bits (51), Expect(2) = 3.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 748 FXPPPPPPP 722
           + PPPPPPP
Sbjct: 187 YNPPPPPPP 195



 Score = 23.8 bits (49), Expect(2) = 5.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 742 PPPPPPP 722
           PPPPPPP
Sbjct: 191 PPPPPPP 197



 Score = 21.0 bits (42), Expect(2) = 3.2
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 613 PPPPPP 596
           PPPPPP
Sbjct: 192 PPPPPP 197



 Score = 21.0 bits (42), Expect(2) = 5.3
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 613 PPPPPP 596
           PPPPPP
Sbjct: 238 PPPPPP 243


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +2

Query: 779 PPPPPPPPP 805
           PPPPPPPPP
Sbjct: 775 PPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 5.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 779 PPPPPPPP 802
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 26.6 bits (56), Expect(2) = 0.89
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 782 PPPPPPPP 805
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 21.0 bits (42), Expect(2) = 0.89
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 779 PPPPPP 796
           PPPPPP
Sbjct: 732 PPPPPP 737


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +2

Query: 497 PPXXXXGGGGXXPPXXKKXTPPPPP 571
           PP     G    PP  +   PPPPP
Sbjct: 342 PPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 23.8 bits (49), Expect(2) = 0.96
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 779 PPPPPPP 799
           PPPPPPP
Sbjct: 311 PPPPPPP 317



 Score = 23.8 bits (49), Expect(2) = 5.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 779 PPPPPPP 799
           PPPPPPP
Sbjct: 337 PPPPPPP 343



 Score = 23.8 bits (49), Expect(2) = 5.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 782 PPPPPPP 802
           PPPPPPP
Sbjct: 337 PPPPPPP 343



 Score = 23.8 bits (49), Expect(2) = 0.96
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 785 PPPPPPP 805
           PPPPPPP
Sbjct: 337 PPPPPPP 343



 Score = 21.0 bits (42), Expect(2) = 5.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 785 PPPPPP 802
           PPPPPP
Sbjct: 361 PPPPPP 366



 Score = 21.0 bits (42), Expect(2) = 5.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 788 PPPPPP 805
           PPPPPP
Sbjct: 361 PPPPPP 366


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 23.4 bits (48), Expect(2) = 1.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 779 PPPPPPPP 802
           P PPPPPP
Sbjct: 3   PAPPPPPP 10



 Score = 23.4 bits (48), Expect(2) = 1.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 782 PPPPPPPP 805
           PPPPPP P
Sbjct: 5   PPPPPPAP 12


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 779 PPPPPPPP 802
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 26.6 bits (56), Expect = 5.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 782 PPPPPPPP 805
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 23.8 bits (49), Expect(2) = 1.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 742 PPPPPPP 722
           PPPPPPP
Sbjct: 9   PPPPPPP 15



 Score = 22.6 bits (46), Expect(2) = 1.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 739 PPPPPPXXXXXKXK 698
           PPPPPP     K K
Sbjct: 24  PPPPPPPGYVKKRK 37


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 779 PPPPPPPPPXXXXXXKKKXXXXXP 850
           PPPPPPPP       K +     P
Sbjct: 370 PPPPPPPPELLNHSPKSRPLGDKP 393


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 779  PPPPPPPP 802
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102



 Score = 26.6 bits (56), Expect = 5.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 782  PPPPPPPP 805
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102



 Score = 23.8 bits (49), Expect(2) = 5.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 742  PPPPPPP 722
            PPPPPPP
Sbjct: 1095 PPPPPPP 1101



 Score = 21.0 bits (42), Expect(2) = 5.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 613  PPPPPP 596
            PPPPPP
Sbjct: 1097 PPPPPP 1102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,258,839
Number of Sequences: 5004
Number of extensions: 34785
Number of successful extensions: 431
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 557214894
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)