Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_A17
(885 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 97 3e-21
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 96 7e-21
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 93 6e-20
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.67
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 28 2.0
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 2.5
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 2.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.6
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 4.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 23 5.6
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 6.2
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 6.2
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 26 8.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 8.2
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 97.1 bits (231), Expect = 3e-21
Identities = 40/69 (57%), Positives = 61/69 (88%)
Frame = +3
Query: 126 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 305
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIEA++E+++ +I ELNGKD+++LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60
Query: 306 KLSSMPVGG 332
KL+++P GG
Sbjct: 61 KLATVPTGG 69
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 95.9 bits (228), Expect = 7e-21
Identities = 41/69 (59%), Positives = 61/69 (88%)
Frame = +3
Query: 126 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 305
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIEA+AE+++ +I+ELNGK++E+LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60
Query: 306 KLSSMPVGG 332
KLS++P G
Sbjct: 61 KLSTVPSAG 69
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 92.7 bits (220), Expect = 6e-20
Identities = 38/69 (55%), Positives = 61/69 (88%)
Frame = +3
Query: 126 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 305
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIE+++E+++ +I EL+GKD+++LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60
Query: 306 KLSSMPVGG 332
KL+++P GG
Sbjct: 61 KLATVPSGG 69
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 29.5 bits (63), Expect = 0.67
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Frame = -3
Query: 262 SSVITFLSFSASASIP--TELRIFSTSAAAGVVLPPSTASKYAAT 134
SSV T LS SAS+SIP + STS ++ V+P S++S +++
Sbjct: 8 SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSS 52
Score = 27.1 bits (57), Expect = 3.6
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = -3
Query: 310 SFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYA 140
SF+ PA+ S TSL SS S SAS + + + S+S+A+ P S++S +A
Sbjct: 70 SFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSAS----PTSSSSSHA 122
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 277 TSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKY 143
+ L + S T +S S+ S+PT+ + T + + V PPS S Y
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQSLY 570
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.0 bits (47), Expect(2) = 2.5
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 799 PPXPPPXPP 825
PP PPP PP
Sbjct: 945 PPPPPPPPP 953
Score = 22.6 bits (46), Expect(2) = 2.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +1
Query: 793 PXPPXPPPXP 822
P PP PPP P
Sbjct: 905 PTPPPPPPLP 914
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = -3
Query: 310 SFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTA 152
SF P+A + S P+SS+ +F + SA+++ P+ + S A P +T+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATS 503
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/68 (23%), Positives = 16/68 (23%)
Frame = +3
Query: 624 PPPPXXXXXXXXXXPGGGLPXXGGPXXPXXXXPXXXXXAPPXPXRXXXXXXPXXXXXXPX 803
PP P P P P P PP P P P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Query: 804 PPPPXXPP 827
PPP P
Sbjct: 1210 VPPPSTAP 1217
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -3
Query: 292 AISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 149
++S S+ L S++ T S +AS+PT I S S P+T+S
Sbjct: 79 SLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 23.0 bits (47), Expect(2) = 5.6
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 799 PPXPPPXPP 825
PP PPP PP
Sbjct: 189 PPPPPPPPP 197
Score = 21.4 bits (43), Expect(2) = 5.6
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +1
Query: 778 PXXXXPXPPXPPP 816
P P PP PPP
Sbjct: 184 PSDYNPPPPPPPP 196
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 192 VEKILSSVGIEADAEKLKKVITELNG 269
V++I VG+E D+E K + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 6.2
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -3
Query: 277 TSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYAAT 134
T LP ++V T SFS SAS T +++ +V PPST+ T
Sbjct: 37 TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTSHNSTTT 82
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 8.2
Identities = 6/15 (40%), Positives = 12/15 (80%)
Frame = +1
Query: 121 KKCVTWPRIYWLCWV 165
+K +W RI+W+C++
Sbjct: 299 EKAESWKRIFWMCYI 313
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +1
Query: 799 PPXPPPXPPXXXXXXPPXPSXXFSPXXGG 885
PP PPP P PP P + GG
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,027
Number of Sequences: 5004
Number of extensions: 34097
Number of successful extensions: 191
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -