Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_A15
(918 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 32 0.099
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.13
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.13
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.7
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c... 26 6.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 8.6
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 32.3 bits (70), Expect = 0.099
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = -1
Query: 918 GGXPGXRXARPGGXXGXXXIWAGGXCRXGXGGGGXXXGXGXXXWEVW 778
GG PG PGG G + GG G G GG G G W
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPGW 273
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.9 bits (69), Expect = 0.13
Identities = 18/43 (41%), Positives = 18/43 (41%)
Frame = +3
Query: 786 PTPXXXFPXXNPPPXXPPGXXPPPKXXGAPXXPQDAXSVPQVP 914
PTP PPP PP PP AP P A S P VP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPP---SAPPPPLPASSAPSVP 1744
Score = 31.1 bits (67), Expect = 0.23
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = +2
Query: 704 PXAXAPPXXXXPGXXXPPHCFPTPNQTSHXXXPFPXXKPPPPXPXRXXP 850
P + APP P PP P P ++ P PPPP P P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPP-PSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 817 TPPPXPXPAXSPRPNXXXPXXPPRTRXPXPRXP 915
TPP P A P+ + P PP + P P P
Sbjct: 1689 TPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAP 1721
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.13
Identities = 21/77 (27%), Positives = 25/77 (32%), Gaps = 6/77 (7%)
Frame = +3
Query: 702 SPXPAPPXPPSXXXXXXXXXXXXXRTKLPTPXXXFPXXNPPPXXPP------GXXPPPKX 863
+P APP P +P P P PP PP G P P
Sbjct: 1154 APSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Query: 864 XGAPXXPQDAXSVPQVP 914
AP P + +P VP
Sbjct: 1214 STAPPVPTPSAGLPPVP 1230
Score = 30.7 bits (66), Expect = 0.30
Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Frame = +3
Query: 702 SPXPAPPXP-PSXXXXXXXXXXXXXRTKLPT---PXXXFPXXNPPPXXPPGXXPP-PKXX 866
+P APP P PS P+ P P PP P PP P
Sbjct: 1078 APSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPS 1137
Query: 867 GAPXXPQDAXSVPQVP 914
GAP P+ + + P VP
Sbjct: 1138 GAPPVPKPSVAAPPVP 1153
Score = 30.3 bits (65), Expect = 0.40
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +3
Query: 774 RTKLPTPXXXFPXXNPPPXXPPGXXPP-PKXXGAPXXPQDAXSVPQVP 914
+ + P P PP P PP P GAP P+ + + P VP
Sbjct: 1125 KPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172
Score = 29.5 bits (63), Expect = 0.70
Identities = 20/82 (24%), Positives = 25/82 (30%), Gaps = 6/82 (7%)
Frame = +3
Query: 687 PXXKXSPXPAPPXPPSXXXXXXXXXXXXXRTKLPTPXXXFPXXNPPPXXPP------GXX 848
P APP P+ +P P P P PP
Sbjct: 1053 PKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVP 1112
Query: 849 PPPKXXGAPXXPQDAXSVPQVP 914
P P GAP P+ + + P VP
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVP 1134
Score = 29.5 bits (63), Expect = 0.70
Identities = 19/70 (27%), Positives = 23/70 (32%)
Frame = +3
Query: 705 PXPAPPXPPSXXXXXXXXXXXXXRTKLPTPXXXFPXXNPPPXXPPGXXPPPKXXGAPXXP 884
P A P P+ +P P P P P G P P AP P
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIP---PVPKPAAGVPPVPPPSEAPPVP 1201
Query: 885 QDAXSVPQVP 914
+ + VP VP
Sbjct: 1202 KPSVGVPPVP 1211
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Frame = +3
Query: 705 PXPAPPXP-PSXXXXXXXXXXXXXRTKLPTPXXXFPXXNPPPXXPPGXXPPPKXXGAPXX 881
P APP P P+ P P + P P G P P G P
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPA--PSGAPPVPAPSGIPPV 1094
Query: 882 PQDAXSVPQVP 914
P+ + + P VP
Sbjct: 1095 PKPSVAAPPVP 1105
Score = 27.9 bits (59), Expect = 2.1
Identities = 22/80 (27%), Positives = 23/80 (28%), Gaps = 4/80 (5%)
Frame = +3
Query: 687 PXXKXSPXPAP----PXPPSXXXXXXXXXXXXXRTKLPTPXXXFPXXNPPPXXPPGXXPP 854
P P PAP P P +P P P PP PP P
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP--VPT 1221
Query: 855 PKXXGAPXXPQDAXSVPQVP 914
P G P P P VP
Sbjct: 1222 PS-AGLPPVPVPTAKAPPVP 1240
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Frame = +3
Query: 792 PXXXFPXXNPPPXXPPGXXPP-PKXXGAPXXPQDAXSVPQVP 914
P P + PP P PP P P P+ + P P
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAP 1063
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 807 PXXNPPPXXPPGXXPPPKXXGAPXXP 884
P NPPP PP PP P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Frame = +3
Query: 711 PAPPXPPSXXXXXXXXXXXXXRTKLPTPXXXF--PXXNPPPXXPPGXXPPPKXXGAPXXP 884
P+ P PP+ R +P P P + P P PP + P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
Query: 885 QDAXSVP 905
A S+P
Sbjct: 185 PSAPSLP 191
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.7
Identities = 24/87 (27%), Positives = 28/87 (32%)
Frame = +2
Query: 590 PNVGWSGFXGTXPPXPPPXXXXXXGXXXXSLXPXXQGFPXAXAPPXXXXPGXXXPPHCFP 769
P +G + PP PPP G S+ QG PP P P
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAG----SIPLPPQGRSAPPPPPPRSAPSTGRQP---- 376
Query: 770 TPNQTSHXXXPFPXXKPPPPXPXRXXP 850
P +S P PPP P R P
Sbjct: 377 -PPLSSSRAVSNP-PAPPPAIPGRSAP 401
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/36 (30%), Positives = 13/36 (36%)
Frame = +3
Query: 807 PXXNPPPXXPPGXXPPPKXXGAPXXPQDAXSVPQVP 914
P PP PP P P P A + P +P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450
>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 26.2 bits (55), Expect = 6.5
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 584 NGPNVGWSGFXGTXPPXPPP 643
NG VGWSGF G P P
Sbjct: 31 NGDYVGWSGFTGVGYPKMIP 50
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +1
Query: 817 TPPPXPXPAXSPRPNXXXPXXPP 885
TP P P P P P P PP
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPP 765
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,078,964
Number of Sequences: 5004
Number of extensions: 27504
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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