Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_A09
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434 33 0.23
05_01_0499 - 4166891-4166942,4167191-4167510 31 1.2
04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016 31 1.6
05_06_0026 - 25024807-25025300,25025432-25025495,25025567-250256... 25 2.1
12_01_0979 - 9914779-9915327,9915409-9915536,9915947-9916050,991... 29 3.8
06_02_0172 + 12594542-12596083 29 5.0
05_07_0359 - 29539294-29540832,29542366-29542518 29 5.0
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111... 29 5.0
02_04_0470 - 23183925-23184743,23184929-23185153 29 6.6
02_02_0272 - 8452994-8453187,8453850-8454975 29 6.6
01_02_0075 + 10873789-10873871,10873883-10874420 29 6.6
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 28 8.7
07_03_0723 + 20954827-20954905,20954974-20956277 28 8.7
06_03_0778 - 24523780-24526353 28 8.7
03_03_0204 + 15436660-15437244,15437355-15437632,15438792-154390... 28 8.7
>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
Length = 418
Score = 33.5 bits (73), Expect = 0.23
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = -3
Query: 383 GMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMAL 267
G P R+SP L+ PAEAALS RSL S P ++
Sbjct: 138 GEEPPRRVSPAAVVLAVLLPAEAALSFIRSLSSLAPFSI 176
>05_01_0499 - 4166891-4166942,4167191-4167510
Length = 123
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = -3
Query: 473 LIANALALRSWLLLWNKLTLPATPSCSPKPGMRVPVRLSPCPFTLSRASPAEAA 312
LI LALR LL N + PS SP+ + R P P + + ASP+ +A
Sbjct: 5 LIIVPLALRGASLLGNAVAAAVVPSSSPEQQQQQQRRPRPPPGSKNGASPSSSA 58
>04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016
Length = 360
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 283 ADFNDRHKLSAASAGLALDNVNGHGLSLTGTRIPGFGEQLGVAGKVNL 426
A N+R + S AS +A + + HG+ + G P +G AG ++L
Sbjct: 173 AGHNERRRRSNASEAMARGSAHPHGMPVLGHGFPPYGLPTSSAGALSL 220
>05_06_0026 -
25024807-25025300,25025432-25025495,25025567-25025662,
25025719-25025929,25026616-25026690,25026820-25027037
Length = 385
Score = 25.4 bits (53), Expect(2) = 2.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 399 LLPEAGNAGPGQAQPVPVYIVQSEPC 322
L P A P QPV V + ++EPC
Sbjct: 35 LPPAAAAVEPLPPQPVAVVVAEAEPC 60
Score = 23.4 bits (48), Expect(2) = 2.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 567 TMRPPSV*TCSPLPPPQRVEV 505
+++PPS +P PPP +V V
Sbjct: 7 SVKPPSPVAAAPPPPPVQVPV 27
>12_01_0979 -
9914779-9915327,9915409-9915536,9915947-9916050,
9919832-9919946,9921036-9921528
Length = 462
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -2
Query: 612 PSSHSG**RQSAPRSTMRPPSV*TCSPLPPPQRVEVGRVGNGA 484
PSS + S + PS+ SP PPPQR+ G VG A
Sbjct: 4 PSSLASSSHLSRRATAAASPSIPPPSPPPPPQRLRCGWVGRAA 46
>06_02_0172 + 12594542-12596083
Length = 513
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 471 QELAQRHSQRAQLQHAGAAGVDYMFKQKVGASLSAAHSDVINRNDYS 611
++LA +HS L H GA + +V S+ H D+ YS
Sbjct: 62 RDLATKHSPDMMLLHLGAVPTLVVSSSRVAQSILHTHDDIFASRPYS 108
>05_07_0359 - 29539294-29540832,29542366-29542518
Length = 563
Score = 29.1 bits (62), Expect = 5.0
Identities = 24/85 (28%), Positives = 33/85 (38%)
Frame = -3
Query: 404 PSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRGTFRA 225
P KPG P R +P P S +S A AA +L +K + P+R +
Sbjct: 155 PVLEAKPGRGRP-RKNPLPVASSTSSAAAAATALSLRVKRGPGRPRKNAAATPLRLGVKR 213
Query: 224 APEVPSEFTVKLPACLRARVGTCLP 150
P P + P L A+ G P
Sbjct: 214 GPGRPRKNAAATPLRLGAKRGPGRP 238
>03_01_0141 +
1116833-1117082,1117658-1118574,1119417-1119579,
1119668-1120497,1120562-1120570
Length = 722
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 411 CDAELLPEAGNAGPGQAQPV 352
C A LLPE GN G GQ+ V
Sbjct: 486 CSATLLPEEGNTGDGQSPKV 505
>02_04_0470 - 23183925-23184743,23184929-23185153
Length = 347
Score = 28.7 bits (61), Expect = 6.6
Identities = 30/93 (32%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Frame = -3
Query: 404 PSCSPKPGMRVPVRLSPCPFTLSRASPAEAAL-----SLWRSLKSADPMALSTFLSLPVR 240
PS +PGMRV R SP +RA P +L S W P A ST S R
Sbjct: 159 PSLPAQPGMRVAHRWSPAK---ARALPPPPSLRYPSRSSWDGADLDGPTAASTTTSRRRR 215
Query: 239 GTFR-AAPEVPSEFTVKLPACLRARVGTCLPLA 144
R P S + + C RA + L A
Sbjct: 216 RHHRLVPPPAASPLSNRQRHCCRAAIAGALESA 248
>02_02_0272 - 8452994-8453187,8453850-8454975
Length = 439
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -3
Query: 368 VRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRG 237
+RL P P +L RA+ A + WR L +ADP L F + RG
Sbjct: 20 LRLPPRPSSLPRAA---AVCARWRRLVTADPAFLRRFRAHHRRG 60
>01_02_0075 + 10873789-10873871,10873883-10874420
Length = 206
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 515 RWGGGSGLHVQTEGGR 562
RWGGG G+ ++EGGR
Sbjct: 168 RWGGGGGVDRRSEGGR 183
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 371 PVRLSPCPFTLSRASPAEAA 312
P+RLSP P ++SR P+ AA
Sbjct: 153 PIRLSPSPRSMSRTRPSSAA 172
>07_03_0723 + 20954827-20954905,20954974-20956277
Length = 460
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 398 CSPKPGMRVPVR-LSPCPFTLSRASPAEAALSLWR 297
CSP P R+P+R + C +ASP + + WR
Sbjct: 62 CSPAPSARIPLRGFTDCRL---KASPGSGSFTRWR 93
>06_03_0778 - 24523780-24526353
Length = 857
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 385 GFGEQL-GVAGKVNLFHNNNHDLSAKAFAIRNSPSAIPNAPNFNTLGR 525
GFGE GVA ++L H+ + D++ K + N + A ++GR
Sbjct: 529 GFGEVYHGVANSLHLLHSPDTDIAVKKLIVSNEYTEREFANEVQSIGR 576
>03_03_0204 +
15436660-15437244,15437355-15437632,15438792-15439068,
15439160-15439405,15440853-15441134
Length = 555
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = -3
Query: 425 KLTLPATPSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKS 285
K + P+ + P P ++P P + +PA A+ WR+ K+
Sbjct: 59 KTSSPSVAAPEKAPVAAAPAPVAPAPAATKQVAPARWAVDSWRTKKA 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,245,963
Number of Sequences: 37544
Number of extensions: 414564
Number of successful extensions: 1723
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1721
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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