Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_A08
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    29   1.2  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    28   2.1  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    27   3.6  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    27   3.6  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   6.3  

>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +2

Query: 473 QSKSFTGLYTADTNVIGAVRYGYNLKNDDNG--VQHXEVQPETFTCESIGEPKITLSSDL 646
           +  S     +A  N + A    +N++N +N   V H  ++ E +  + + EP+I  SSD+
Sbjct: 47  RQNSIAASMSAYPNGMYAGAENHNVENHENYTMVGHDHME-EVYGDDLVNEPRIAYSSDI 105

Query: 647 SSALE-KDSGNN 679
            +  + KD G+N
Sbjct: 106 VATFDGKDFGSN 117


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -3

Query: 489 VKDFDCSVNSITMSPTICKSAFVFSSTVFALV 394
           VKDF C  N+I+M   + K+   F S+VF+L+
Sbjct: 563 VKDFVCGANTISMQWNLQKN-MEFISSVFSLI 593


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 446 GDIVIELTEQSKSFTGLYTADTNVIGAVRYGYNLKND 556
           G IVI L +  +S   L+  D   I  + YG  +  D
Sbjct: 139 GSIVINLRDSGESLPPLFFHDDECISTIEYGKQITRD 175


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 986

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +2

Query: 482  SFTGLYTADTNVIGAVRYGYNLKNDDNGV---QHXEVQPETFTCESIGEPKITLSSDLSS 652
            + T +Y+ D+ ++ +V+    L +  N +      ++ PE ++  S+GE  + L S+   
Sbjct: 836  AMTKIYSFDSPLLDSVQVKGELISHSNRIITRSQSKLHPEEYSYVSVGEKILRLLSEEFV 895

Query: 653  ALEKDS 670
            +L KD+
Sbjct: 896  SLSKDA 901


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 584 QPETFTCESIGEPKITLSSDLSSALEK 664
           +P+TF C+S  EP   ++S L    EK
Sbjct: 684 EPQTFNCDSFNEPGTEITSFLYDFDEK 710


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,241,480
Number of Sequences: 5004
Number of extensions: 68257
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)