Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_A04
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...   152   7e-38
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...   146   3e-36
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    38   0.001
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.28 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.64 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.84 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.9  
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...    26   7.9  

>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score =  152 bits (368), Expect = 7e-38
 Identities = 81/156 (51%), Positives = 105/156 (67%), Gaps = 1/156 (0%)
 Frame = +2

Query: 92  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 271
           ML+PK+NR AI++ LF++GV+VAKKD++ PKH E+  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 272 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 451
            W  FY+ LTNEG+EYLR +LHLP E+VPAT KR VR    R    GRP+   RS+   +
Sbjct: 60  NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAPR---AGRPEPRERSSAADA 116

Query: 452 AYRRTPAAPGVAPHDKKAD-VGPGSADLEFKGGYGR 556
            YRR          +KK D   PG     F+GG+GR
Sbjct: 117 GYRRA---------EKKDDGAAPGGFAPSFRGGFGR 143


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score =  146 bits (355), Expect = 3e-36
 Identities = 78/155 (50%), Positives = 101/155 (65%)
 Frame = +2

Query: 92  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 271
           ML+PK+NR AI++ LF +GV+VAKKD++ PKH E+  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 272 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 451
            W  FY+ LTNEG+EYLR +LHLP E+VPAT KR VR    R    GRP+   R++ D +
Sbjct: 60  NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAPR---AGRPEPRERASAD-A 115

Query: 452 AYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGR 556
            YRR           K     P      F+GG+GR
Sbjct: 116 GYRRA--------EKKDEGAAPSGFAPSFRGGFGR 142


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = +1

Query: 658 PPXXXXXPXPXPXXXXXGXPPPPXXGXPXPPPXXPXXXXXPPPPXP 795
           PP     P P P       P P   G P PPP        PPPP P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 34.3 bits (75), Expect = 0.022
 Identities = 16/49 (32%), Positives = 16/49 (32%)
 Frame = +3

Query: 657 PPPXXXXXXXXXXXXXXRXXPPPXXGXPXPPPXXPXXXXXPPPPXPXXP 803
           PPP                 P P  G P PPP  P      PPP P  P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 34.3 bits (75), Expect = 0.022
 Identities = 18/50 (36%), Positives = 18/50 (36%)
 Frame = +1

Query: 646 PXXXPPXXXXXPXPXPXXXXXGXPPPPXXGXPXPPPXXPXXXXXPPPPXP 795
           P    P     P P P       PP P  G P PPP  P      PPP P
Sbjct: 737 PAVIVPTPAPAPIPVP-------PPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +1

Query: 685 PXPXXXXXGXPPPPXXGXPXPPPXXPXXXXXPPPPXP 795
           P P       P P     P PPP        PPPP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = +1

Query: 679 PXPXPXXXXXGXPPPPXXGXPXPPPXXPXXXXXPPPPXP 795
           P P P       P P     P PPP  P     PPPP P
Sbjct: 732 PPPPPPAVIVPTPAPAPI--PVPPP-APIMGGPPPPPPP 767



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +1

Query: 646 PXXXPPXXXXXPXPXPXXXXXGXPPPPXXGXPXPPP 753
           P   P      P P P       PPPP    P PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP----PPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 15/50 (30%), Positives = 15/50 (30%)
 Frame = +1

Query: 646 PXXXPPXXXXXPXPXPXXXXXGXPPPPXXGXPXPPPXXPXXXXXPPPPXP 795
           P   P      P   P        PP   G P  PP  P     PP P P
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +1

Query: 715 PPPPXXGXPXPPPXXPXXXXXPPPPXP 795
           PPPP        P  P     PPPP P
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/43 (30%), Positives = 13/43 (30%)
 Frame = +1

Query: 661 PXXXXXPXPXPXXXXXGXPPPPXXGXPXPPPXXPXXXXXPPPP 789
           P     P   P       PP    G P  PP  P     PP P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
 Frame = +1

Query: 679 PXPXPXXXXXGXPPPPXXGX---PXPPPXXPXXXXXPPPP 789
           P P P     G  P P  G    P PPP         PPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
 Frame = +1

Query: 715  PPPPXXGXPXPPPXXPXXXXXPP--PPXP 795
            PPPP    P PPP  P     PP  PP P
Sbjct: 1707 PPPPPMSVP-PPPSAPPMPAGPPSAPPPP 1734



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +3

Query: 717  PPPXXGXPXPPPXXPXXXXXPPPPXPXXP 803
            PPP    P PP   P     P  P P  P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +1

Query: 709 GXPPPPXXGXPXPPPXXPXXXXXPPPP 789
           G PPPP    P PP   P     PPPP
Sbjct: 7   GNPPPP----PPPPGFEPPSQPPPPPP 29



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 717 PPPXXGXPXPPPXXPXXXXXPPPPXP 794
           PP     P PPP        PPPP P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +1

Query: 718 PPPXXGXPXPPPXXPXXXXXPPPPXP 795
           PP     P PPP        PPPP P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/50 (30%), Positives = 15/50 (30%)
 Frame = +1

Query: 646  PXXXPPXXXXXPXPXPXXXXXGXPPPPXXGXPXPPPXXPXXXXXPPPPXP 795
            P   PP         P     G PP P      PP   P     PP P P
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP--VPAPSGAPPVPKP 1164



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/50 (30%), Positives = 15/50 (30%)
 Frame = +1

Query: 646  PXXXPPXXXXXPXPXPXXXXXGXPPPPXXGXPXPPPXXPXXXXXPPPPXP 795
            P   PP         P     G PP P      PP   P     PP P P
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP-SSGIPPVPKP 1184


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/50 (34%), Positives = 17/50 (34%)
 Frame = -1

Query: 794 GXGGGGXXXXXGXXGGGXGXPXXGGGGXPXXXXXGXGXGXXXXXGGXXXG 645
           G  GGG     G  GGG G P  G GG       G         GG   G
Sbjct: 184 GHNGGGF----GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = -1

Query: 794 GXGGGGXXXXXGXXGGGXGXPXXGGGGXPXXXXXGXGXGXXXXXGG 657
           G  GGG     G  GG  G P   GGG       G G G     GG
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGG-----LGGFGGGPGGFGGG 264


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +1

Query: 715 PPPPXXGXPXPPPXXPXXXXXPPPPXP 795
           PP P    P P    P     PPP  P
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQP 177


>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 450 DLSSAERAGASGRPTGPRRT 391
           DLSSAER  A GRP   + T
Sbjct: 221 DLSSAERVVAGGRPLKDKET 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,704,243
Number of Sequences: 5004
Number of extensions: 53236
Number of successful extensions: 280
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)