Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_A03
(860 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48615-1|CAA88531.1| 953|Homo sapiens serine/threonine kinase w... 36 0.19
X90846-1|CAA62351.1| 954|Homo sapiens mixed lineage kinase 2 pr... 36 0.19
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 32 2.3
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 32 2.3
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 32 2.3
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 32 2.3
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro... 32 2.3
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 32 2.3
BC050463-1|AAH50463.1| 953|Homo sapiens conserved nuclear prote... 31 5.4
BC001584-1|AAH01584.1| 718|Homo sapiens LOC124245 protein protein. 31 5.4
AK092711-1|BAC03955.1| 149|Homo sapiens protein ( Homo sapiens ... 31 5.4
>Z48615-1|CAA88531.1| 953|Homo sapiens serine/threonine kinase with
SH3 domain, leucine zipper domain and proline rich
protein.
Length = 953
Score = 35.9 bits (79), Expect = 0.19
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = -2
Query: 721 SATLPEGRKA--DRYPVSGRGRKQESARGSFQGETPGIFIVLSGFATSDLSVDFCDARQG 548
S+TL + R +R G G KQ S+ G++P + GFA+ + +F +A G
Sbjct: 561 SSTLQKERVGGEERLKGLGEGSKQWSSSAPNLGKSPKHTPIAPGFASLNEMEEFAEAEDG 620
Query: 547 GGAYGKTPATRPFYGSWP 494
G + +P + P Y S P
Sbjct: 621 GSSVPPSPYSTPSYLSVP 638
>X90846-1|CAA62351.1| 954|Homo sapiens mixed lineage kinase 2
protein.
Length = 954
Score = 35.9 bits (79), Expect = 0.19
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = -2
Query: 721 SATLPEGRKA--DRYPVSGRGRKQESARGSFQGETPGIFIVLSGFATSDLSVDFCDARQG 548
S+TL + R +R G G KQ S+ G++P + GFA+ + +F +A G
Sbjct: 562 SSTLQKERVGGEERLKGLGEGSKQWSSSAPNLGKSPKHTPIAPGFASLNEMEEFAEAEDG 621
Query: 547 GGAYGKTPATRPFYGSWP 494
G + +P + P Y S P
Sbjct: 622 GSSVPPSPYSTPSYLSVP 639
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 32.3 bits (70), Expect = 2.3
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
Frame = -2
Query: 853 GWTQDDSYRIRGSXRAERGVXAHSPAGSERPTPELRY-LQREL*ESATLPEGRKADRYPV 677
GW++ + + RG R+ R +HS + + R R +R S T R R P
Sbjct: 541 GWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPT 600
Query: 676 SGRGRKQESA-RGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATR 515
R R + A RG + TP + S AR+ G + +TPA R
Sbjct: 601 RRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR 655
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
subunit SRm300 protein.
Length = 2296
Score = 32.3 bits (70), Expect = 2.3
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
Frame = -2
Query: 853 GWTQDDSYRIRGSXRAERGVXAHSPAGSERPTPELRY-LQREL*ESATLPEGRKADRYPV 677
GW++ + + RG R+ R +HS + + R R +R S T R R P
Sbjct: 541 GWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPT 600
Query: 676 SGRGRKQESA-RGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATR 515
R R + A RG + TP + S AR+ G + +TPA R
Sbjct: 601 RRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR 655
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
protein.
Length = 2752
Score = 32.3 bits (70), Expect = 2.3
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
Frame = -2
Query: 853 GWTQDDSYRIRGSXRAERGVXAHSPAGSERPTPELRY-LQREL*ESATLPEGRKADRYPV 677
GW++ + + RG R+ R +HS + + R R +R S T R R P
Sbjct: 541 GWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPT 600
Query: 676 SGRGRKQESA-RGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATR 515
R R + A RG + TP + S AR+ G + +TPA R
Sbjct: 601 RRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR 655
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein
protein.
Length = 956
Score = 32.3 bits (70), Expect = 2.3
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
Frame = -2
Query: 853 GWTQDDSYRIRGSXRAERGVXAHSPAGSERPTPELRY-LQREL*ESATLPEGRKADRYPV 677
GW++ + + RG R+ R +HS + + R R +R S T R R P
Sbjct: 506 GWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPT 565
Query: 676 SGRGRKQESA-RGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATR 515
R R + A RG + TP + S AR+ G + +TPA R
Sbjct: 566 RRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR 620
>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
protein.
Length = 1262
Score = 32.3 bits (70), Expect = 2.3
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
Frame = -2
Query: 853 GWTQDDSYRIRGSXRAERGVXAHSPAGSERPTPELRY-LQREL*ESATLPEGRKADRYPV 677
GW++ + + RG R+ R +HS + + R R +R S T R R P
Sbjct: 331 GWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPT 390
Query: 676 SGRGRKQESA-RGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATR 515
R R + A RG + TP + S AR+ G + +TPA R
Sbjct: 391 RRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR 445
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 32.3 bits (70), Expect = 2.3
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
Frame = -2
Query: 853 GWTQDDSYRIRGSXRAERGVXAHSPAGSERPTPELRY-LQREL*ESATLPEGRKADRYPV 677
GW++ + + RG R+ R +HS + + R R +R S T R R P
Sbjct: 589 GWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPT 648
Query: 676 SGRGRKQESA-RGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATR 515
R R + A RG + TP + S AR+ G + +TPA R
Sbjct: 649 RRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR 703
>BC050463-1|AAH50463.1| 953|Homo sapiens conserved nuclear protein
NHN1 protein.
Length = 953
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 830 PDKGQRSG*TGGXCTQPSWERTTYTGTEIPTA*AMRKRHASGREK 696
PD+G R +GG P ER ++ P A A RKR S + K
Sbjct: 853 PDRGSRDRKSGGRLGSPKPERQRGQNSKAPAAPADRKRQLSPQSK 897
>BC001584-1|AAH01584.1| 718|Homo sapiens LOC124245 protein protein.
Length = 718
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 830 PDKGQRSG*TGGXCTQPSWERTTYTGTEIPTA*AMRKRHASGREK 696
PD+G R +GG P ER ++ P A A RKR S + K
Sbjct: 618 PDRGSRDRKSGGRLGSPKPERQRGQNSKAPAAPADRKRQLSPQSK 662
>AK092711-1|BAC03955.1| 149|Homo sapiens protein ( Homo sapiens
cDNA FLJ35392 fis, clone SKNSH2000716. ).
Length = 149
Score = 31.1 bits (67), Expect = 5.4
Identities = 20/39 (51%), Positives = 20/39 (51%)
Frame = -2
Query: 556 RQGGGAYGKTPATRPFYGSWPFAGLLLTCSFLRYPPDSV 440
RQ G G A R F S P GLL CS LR PDSV
Sbjct: 69 RQHFGIPGYPEAARDFSSS-PAPGLLTLCSRLRAKPDSV 106
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,789,093
Number of Sequences: 237096
Number of extensions: 2862962
Number of successful extensions: 12981
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12977
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10984231046
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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