Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_A02
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 39 7e-04
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 38 0.001
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 34 0.025
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.10
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.54
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.54
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.54
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.95
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 29 0.95
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.3
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 3.8
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 23 3.9
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 5.1
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 6.7
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 8.9
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 39.1 bits (87), Expect = 7e-04
Identities = 22/59 (37%), Positives = 22/59 (37%)
Frame = -3
Query: 744 GXGGGGXXXPXGGGGGXGXXXXXXRGXXXGXXGGGGGGXXXXXXXXGXGKKXXGGGGGG 568
G GGG P G GG G G G GG GGG G GG GGG
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250
Score = 31.9 bits (69), Expect = 0.10
Identities = 23/63 (36%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Frame = -2
Query: 745 GXGG-GGXXXPXGGGGGXGXXXXXXXGXXXG-GGGXGXGGXXXXXXXXGXGEKXRXGGGG 572
G GG GG GG GG G G G GGG G G G G GG
Sbjct: 209 GFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGH 268
Query: 571 GXP 563
G P
Sbjct: 269 GGP 271
Score = 31.1 bits (67), Expect = 0.18
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = -1
Query: 746 GGXGGGGAXPXXGGGGXXGXXXXXXGXXXXGXXXGXGGG 630
GG GGG P G GG G G G GGG
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229
Score = 29.5 bits (63), Expect = 0.54
Identities = 25/74 (33%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Frame = -2
Query: 745 GXGGGGXXXPXGGGGGXGXXXXXXXGXXXGGGGXG--XGGXXXXXXXXGXGEKXRXGGGG 572
G GGG GGG G G G GG G GG G G + GG G
Sbjct: 184 GHNGGGFGG-FGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPG-GFEGGPGGFG 241
Query: 571 GXPXXXKXKXGGGG 530
G P GG G
Sbjct: 242 GGPGGFGGGLGGFG 255
Score = 28.7 bits (61), Expect = 0.95
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -2
Query: 745 GXGGGGXXXPXGGGGGXGXXXXXXXGXXXGGGGXGXGG 632
G GG P G GGG G G G GG G G
Sbjct: 235 GGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/57 (35%), Positives = 20/57 (35%)
Frame = -3
Query: 744 GXGGGGXXXPXGGGGGXGXXXXXXRGXXXGXXGGGGGGXXXXXXXXGXGKKXXGGGG 574
G GG P G GG G G G GGG GG G G GG G
Sbjct: 221 GGHGGFGGGPGGFEGGPGGF-----GGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/38 (44%), Positives = 17/38 (44%)
Frame = +2
Query: 632 PPPPPPXXPXXXPRXXXXXXPXPPPPPXGXXXPPPPXP 745
PPPPPP P P PPP P PPPP P
Sbjct: 732 PPPPPP--AVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = +2
Query: 632 PPPPPPXXPXXXPRXXXXXXPXPPPPPX--GXXXPPPPXP 745
P P P P P P PPPPP G PPPP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 35.9 bits (79), Expect = 0.006
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +1
Query: 610 PXXXXXXPPPXPXXXPXXXXPXXXXXXPXXPPPPXXGXAPPPPXPP 747
P P P P P P PPPP A PPP PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 35.9 bits (79), Expect = 0.006
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = +1
Query: 610 PXXXXXXPPPXPXXXPXXXXPXXXXXXPXXPPPPXXGXAPPPPXPP 747
P P P P P P P PPP G PPPP PP
Sbjct: 737 PAVIVPTPAPAPIPVPPPA-PIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 35.5 bits (78), Expect = 0.008
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Frame = +3
Query: 636 PXPXPPP-PXXXPXXXXXXXPXPPPPPX----GXXXPPPPXP 746
P P P P P P P PPPPP G PPPP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 32.3 bits (70), Expect = 0.077
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Frame = +3
Query: 633 PPXPX---PPPPXXXPXXXXXXXPXPPPPP 713
PP P PPPP P P PPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 30.7 bits (66), Expect = 0.24
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = +1
Query: 631 PPPXPXXXPXXXXPXXXXXXPXXPPPPXXGXAPPPPXPP 747
PPP P P P PP P G PPPP PP
Sbjct: 733 PPPPPAVIVPTPAPAPI---PVPPPAPIMG-GPPPPPPP 767
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/27 (37%), Positives = 10/27 (37%)
Frame = +3
Query: 633 PPXPXPPPPXXXPXXXXXXXPXPPPPP 713
PP P PPPP P P P
Sbjct: 775 PPPPPPPPPAVSAGGSRYYAPAPQAEP 801
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 33.9 bits (74), Expect = 0.025
Identities = 18/55 (32%), Positives = 19/55 (34%)
Frame = -3
Query: 732 GGXXXPXGGGGGXGXXXXXXRGXXXGXXGGGGGGXXXXXXXXGXGKKXXGGGGGG 568
GG GG GG G G GGG GG G + GG GG
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63
Score = 30.7 bits (66), Expect = 0.24
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -3
Query: 744 GXGGGGXXXPXGGGGGXGXXXXXXRGXXXGXXGGGGGG 631
G GGG GGG G RG G GG GG
Sbjct: 26 GGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63
Score = 30.3 bits (65), Expect = 0.31
Identities = 19/62 (30%), Positives = 19/62 (30%)
Frame = -2
Query: 712 GGGGGXGXXXXXXXGXXXGGGGXGXGGXXXXXXXXGXGEKXRXGGGGGXPXXXKXKXGGG 533
G GG G G G GG G G G R G GG G G
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65
Query: 532 GA 527
GA
Sbjct: 66 GA 67
Score = 29.9 bits (64), Expect = 0.41
Identities = 23/61 (37%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Frame = -3
Query: 744 GXGG--GGXXXPXGGGGGXGXXXXXXRGXXXGXXGGGGGGXXXXXXXXGXGKKXXGGGGG 571
G GG GG GG GG G RG G GG GG G G+ GG G
Sbjct: 10 GRGGSRGGRGGFNGGRGGFGGGRGGARG---GGRGGARGGRGGRGGARG-GRGGSSGGRG 65
Query: 570 G 568
G
Sbjct: 66 G 66
Score = 29.9 bits (64), Expect = 0.41
Identities = 21/58 (36%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Frame = -3
Query: 738 GGGGXXXPXGG-GGGXGXXXXXXRGXXXGXXGGGGGGXXXXXXXXGXGKKXXGGGGGG 568
G GG GG GGG G RG G GG GG G GG GG
Sbjct: 17 GRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGA----RGGRGGSSGGRGGAKGG 70
Score = 28.7 bits (61), Expect = 0.95
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = -3
Query: 744 GXGGGGXXXPXGGGGGXGXXXXXXRGXXXGXXGGGGGG 631
G GGG GG GG G RG G GG GG
Sbjct: 34 GARGGGRGGARGGRGGRG-GARGGRGGSSGGRGGAKGG 70
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.9 bits (69), Expect = 0.10
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 636 PXPXPPPPXXXPXXXXXXXPXPPPPP 713
P PPPP P P PPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 29.9 bits (64), Expect = 0.41
Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Frame = +3
Query: 693 PXPPPPPXGXXXP--PPPXP 746
P PPPPP G P PPP P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPP 28
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Frame = +1
Query: 700 PPPPXXGXAPP--PPXPP 747
PPPP G PP PP PP
Sbjct: 11 PPPPPPGFEPPSQPPPPP 28
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Frame = +1
Query: 691 PXXPPPPXXGXA--PPPPXPP 747
P PPPP PPPP PP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.5 bits (63), Expect = 0.54
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +3
Query: 642 PXPPPPXXXPXXXXXXXPXPPPPPXGXXXPPPPXP 746
P PPPP P P PP PPPP P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPS---APPPPLP 1736
Score = 29.1 bits (62), Expect = 0.72
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +3
Query: 633 PPXPXPPPPXXXPXXXXXXXPXPPPPPXGXXXPPPPXP 746
PP PPPP P PPP P P P P
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLP-ASSAPSVPNP 1746
Score = 28.7 bits (61), Expect = 0.95
Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Frame = +3
Query: 636 PXPXPPPPXXXPXXXXXXXPXPPPPPXGXXXPP--PPXP 746
P PP P PPPPP PP PP P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP 1724
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = +3
Query: 633 PPXPXPPPPXXXPXXXXXXXPXPPPPPXGXXXPPPP 740
P P PP P PPP PPPP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPP 1718
Score = 27.1 bits (57), Expect = 2.9
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 700 PPPPXXGXAPPPPXPP 747
PPPP PPP PP
Sbjct: 1707 PPPPPMSVPPPPSAPP 1722
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.54
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +1
Query: 631 PPPXPXXXPXXXXPXXXXXXPXXPPPPXXGXAPPPPXPP 747
PP P P P P PPP G PP P
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSP 271
Score = 29.5 bits (63), Expect = 0.54
Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Frame = +2
Query: 632 PPPPPPXXPXXXPRXXXXXXPXPPP-PPXGXXXPPPP 739
PP PP P P P PP PP PP P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
Score = 29.1 bits (62), Expect = 0.72
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +3
Query: 633 PPXPXPPPPXXXPXXXXXXXPXPPPPPXGXXXPPPPXPXK 752
P P PP P P PPP G PP P +
Sbjct: 234 PSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPR 273
Score = 29.1 bits (62), Expect = 0.72
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +2
Query: 635 PPPPPXXPXXXPRXXXXXXPXPPPPPXGXXXPPPPXP 745
PP PP P P PP PP PP P P
Sbjct: 447 PPLPPSAPIAPP-LPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 28.7 bits (61), Expect = 0.95
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +3
Query: 648 PPPPXXXPXXXXXXXPXPPPPPXGXXXPPPPXP 746
PPPP P P PP G PPPP P
Sbjct: 337 PPPP---PPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 5/42 (11%)
Frame = +2
Query: 635 PPPPPXXPXXXP--RXXXXXXPXP---PPPPXGXXXPPPPXP 745
PP PP P P R P P PPP G PP P
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSP 271
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Frame = +2
Query: 632 PPPPPPXX--PXXXPRXXXXXXPXPPPPP---XGXXXPPPP 739
PPPPPP P PPPPP PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Frame = +2
Query: 632 PPPPPPXXPXXXPR--XXXXXXPXPPPPPXGXXXPPPPXP 745
PP PP P P P PP P G PP P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Frame = +3
Query: 642 PXPPPPXXXPXXXXXXXPXPPPP-PXGXXXPPPPXP 746
P P PP P P PP P G PP P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.54
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 6/44 (13%)
Frame = +2
Query: 632 PPPPPPXXPXXXPRXXXXXXPXPPP------PPXGXXXPPPPXP 745
PP PPP P+ P PPP P PP P P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Frame = +3
Query: 642 PXPPPPXXXPXXXXXXXPXP---PPPPXGXXXPPPPXP 746
P PPP P P P PP P PP P P
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKP 1097
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +3
Query: 642 PXPPPPXXXPXXXXXXXPXPPPPPXGXXXPPPPXP 746
P PPP P PP P PP P P
Sbjct: 1208 PPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.7 bits (61), Expect = 0.95
Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Frame = +3
Query: 633 PPXPXPPPPXXXPXXXXXXXPXP-PPPPXGXXXPPPPXP 746
PP PP P P P P PP PPP P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 5/41 (12%)
Frame = +3
Query: 633 PPXPXPPPPXXXPXXXXXXXPXPPP-----PPXGXXXPPPP 740
PP P PP P P P PP PPPP
Sbjct: 165 PPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 28.7 bits (61), Expect = 0.95
Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = -2
Query: 670 GXXXGGGGXGXGGXXXXXXXXGX-GEKXRXGGGGGXPXXXKXKXGGGGA 527
G GGG G GG G G + R GGG P GGGGA
Sbjct: 136 GGGMGGGMGGMGGMDDDMDMDGGFGTRTR---GGGMPGGFANMFGGGGA 181
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +3
Query: 633 PPXPXPPPPXXXPXXXXXXXPXPPPPPXGXXXPPPP 740
PP PP P PPPPP PPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPP-----PPPP 197
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = +3
Query: 636 PXPXPPPPXXXPXXXXXXXPXPPPPPXGXXXPPPPXP 746
P P PP P P PPP PP P
Sbjct: 725 PQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAP 761
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 22.6 bits (46), Expect(2) = 3.9
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 727 PPPPXPPXN 753
PPPP PP N
Sbjct: 308 PPPPPPPSN 316
Score = 22.2 bits (45), Expect(2) = 3.9
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +1
Query: 718 GXAPPPPXPP 747
G PPPP PP
Sbjct: 304 GLPPPPPPPP 313
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +3
Query: 648 PPPPXXXPXXXXXXXPXPPPPPXGXXXPPP 737
PPPP PPPP G PP
Sbjct: 909 PPPPTASMTASAPAIASPPPPKVGETYHPP 938
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/57 (29%), Positives = 17/57 (29%)
Frame = -3
Query: 738 GGGGXXXPXGGGGGXGXXXXXXRGXXXGXXGGGGGGXXXXXXXXGXGKKXXGGGGGG 568
G G G GG G G G GGG G G GG GG
Sbjct: 133 GPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -3
Query: 744 GXGGGGXXXPXGGGGGXGXXXXXXRGXXXGXXGGGGGG 631
G GG G GG G G G GG GGG
Sbjct: 136 GRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGG 173
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Frame = +2
Query: 632 PPPPPPXXPXXXPRXXXXXXPXPPP-PPXG 718
PPPPP P P PP PP G
Sbjct: 1883 PPPPPMALPKAGPPSAAPTSALPPAGPPAG 1912
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,664,056
Number of Sequences: 5004
Number of extensions: 30082
Number of successful extensions: 542
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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