Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_A02
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.44 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +2

Query: 635 PPPPPXXPXXXPRXXXXXXPXPPPPPXGXXXPPP 736
           P P P      P+      P   PPP G    PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = +1

Query: 670 PXXXXXXPXXPPPPXXGXAPPPPXPP 747
           P      P    PP     PPP  PP
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/45 (26%), Positives = 12/45 (26%)
 Frame = +1

Query: 610 PXXXXXXPPPXPXXXPXXXXPXXXXXXPXXPPPPXXGXAPPPPXP 744
           P      P P P   P              PPP     APP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 633 PPXPXPPPP 659
           PP P PPPP
Sbjct: 338 PPKPAPPPP 346



 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 692 PXPPPPPXGXXXP 730
           P PPPPP     P
Sbjct: 341 PAPPPPPPSSSGP 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 709  PXXGXAPPPPXPPXN 753
            P  G   PPP PP N
Sbjct: 1852 PVSGSPEPPPPPPRN 1866


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 56  FGVKLAYRRXSRC 94
           FG KLA+R  +RC
Sbjct: 114 FGAKLAWRNATRC 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,318
Number of Sequences: 438
Number of extensions: 7490
Number of successful extensions: 28
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)