Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_P19
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.052
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.31 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.41 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   5.1  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 766 PXPXPPPPPP 795
           P P PPPPPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 24.6 bits (51), Expect(2) = 0.052
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 737 PPPPPPPPXXXXP 775
           P PPPPPP    P
Sbjct: 341 PAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 734 PPPPPPPP 757
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 734 PPPPPPPPP 760
           PP P PPPP
Sbjct: 338 PPKPAPPPP 346



 Score = 23.0 bits (47), Expect(2) = 0.052
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 734 PPPPPPPPP 760
           P P PPPPP
Sbjct: 339 PKPAPPPPP 347



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 757 PXXPXPXPPPP 789
           P  P P PPPP
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 734  PPPPPPPP 757
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 26.6 bits (56), Expect = 0.31
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 737  PPPPPPPP 760
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 723  WXXXPPPPXPPP 758
            W    PPP PPP
Sbjct: 1350 WRQQQPPPPPPP 1361



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 772  PXPPPPPP 795
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.2 bits (55), Expect = 0.41
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 716  LPLXXXPPPPPPPP 757
            +P+   P PPPPPP
Sbjct: 1851 IPVSGSPEPPPPPP 1864



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 757  PXXPXPXPPPPPP 795
            P    P PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 737  PPPPPPPP 760
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 704  RXTPLPLXXXPPPPPP 751
            R  P+     PPPPPP
Sbjct: 1849 RNIPVSGSPEPPPPPP 1864


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
 Frame = +2

Query: 671 PHPPPSXXPPXRXTPLPLXXXPPP--PPPPPP 760
           P P  S   P R +P      PPP  PP  PP
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -1

Query: 794 GGGGGGXGXGXXGGGXGGG 738
           G  GG    G   GG GGG
Sbjct: 33  GASGGSIVVGANNGGGGGG 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,932
Number of Sequences: 438
Number of extensions: 5300
Number of successful extensions: 38
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)