Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_P18
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    26   6.3  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   8.3  

>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = +2

Query: 368 SETRTARPREALEXSRX----NIERTXEEL-RKAHPDVEKNAXXL 487
           SE ++  P E LE  R     +I+R   EL +K HPD  KNA  L
Sbjct: 26  SELKSLTPYEILELPRTCTANDIKRKYIELVKKHHPDKMKNASQL 70


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 355 SXGALGDANGKAKGGFGTVEAEHRAHGRGAPQG 453
           S G  G  NG  +GGFG      R  GRG  +G
Sbjct: 14  SRGGRGGFNG-GRGGFGGGRGGARGGGRGGARG 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,722,955
Number of Sequences: 5004
Number of extensions: 20302
Number of successful extensions: 71
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)