Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_P17
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    28   1.6  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   2.8  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    27   3.6  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   8.4  

>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = -2

Query: 499 CGICILYESADLCTSQLLIHCSM*WHQSKFCAQNSIVCCLSRHSYTSSSIYKMKTNEMEY 320
           CG C  + +   C  +L  H  + W ++KF     ++C   ++S T    Y+  T   +Y
Sbjct: 37  CGQCEKFYACFQCHDELNTHPFLPWRKAKFHIP-CVICGACKNSLTVEE-YR-STVHCKY 93

Query: 319 IDFFHQMNSNC*QHQQXY 266
            +  H  N  C  H   Y
Sbjct: 94  CN--HPFNPKCKNHAGYY 109


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 7/31 (22%), Positives = 23/31 (74%)
 Frame = +1

Query: 307  EKSLCTPSRWFSSYKCLSSCRNDGTNSKRWN 399
            +++LC    ++++++C+SS ++D  +++ +N
Sbjct: 1689 QEALCAKLYFYTAFECMSSLKSDSHDTEEYN 1719


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 418 SKFCAQNSIVCCLSRHSYTSSSIYKMKTNEMEY 320
           S+F A  S++C L RH    SSI       M Y
Sbjct: 8   SRFSANQSVLCLLQRHRVFFSSISVKPRKRMVY 40


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 429 YMEQWINNWLVHKSADSYK 485
           +ME W   WL H+S DSY+
Sbjct: 361 WMEIWC--WLTHRSVDSYR 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,757
Number of Sequences: 5004
Number of extensions: 44427
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)