Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_P16
         (912 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical ...    68   1e-11
AF016423-4|AAX88829.1|  185|Caenorhabditis elegans Hypothetical ...    67   2e-11
AL034365-5|CAA22258.1|  172|Caenorhabditis elegans Hypothetical ...    33   0.28 

>AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical
           protein F40A3.3a protein.
          Length = 221

 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
 Frame = +1

Query: 91  IMSLVAXAFEASXIVPDVIPV-APTKXXELKYPSGAIASQGNXLTPTQVXXXPSVTFEAX 267
           + ++ A AF    ++PDV+    P+K   +K+ SG  A+ GN LTPTQV   P V ++A 
Sbjct: 34  LATMAAEAFTKHEVIPDVLASNPPSKVVSVKFNSGVEANLGNVLTPTQVKDTPEVKWDAE 93

Query: 268 AXAFYTLVFTDPDNYDGPELVYRE 339
             A YTL+ TDPD     E  YRE
Sbjct: 94  PGALYTLIKTDPDAPSRKEPTYRE 117



 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 19/33 (57%), Positives = 24/33 (72%)
 Frame = +3

Query: 552 FAEKYNLGAPVAGXFYRAQFDDYVPQLYKXLGA 650
           F  K+ LGAPV G  ++A++DDYVP L K LGA
Sbjct: 189 FVAKHKLGAPVFGNLFQAEYDDYVPILNKQLGA 221



 Score = 34.7 bits (76), Expect = 0.093
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 446 RYVYILYKQPGKLXFDEK-RLTNTSIDGRASFLHEEVR*KVQPGGACRRXLLQSAVRRLC 622
           RYVY++YKQ G++   E  RLTNTS D R  +   +   K + G      L Q+      
Sbjct: 153 RYVYLIYKQSGRIEDAEHGRLTNTSGDKRGGWKAADFVAKHKLGAPVFGNLFQAEYDDYV 212

Query: 623 PTALQXLG 646
           P   + LG
Sbjct: 213 PILNKQLG 220


>AF016423-4|AAX88829.1|  185|Caenorhabditis elegans Hypothetical
           protein F40A3.3b protein.
          Length = 185

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
 Frame = +1

Query: 100 LVAXAFEASXIVPDVIPV-APTKXXELKYPSGAIASQGNXLTPTQVXXXPSVTFEAXAXA 276
           + A AF    ++PDV+    P+K   +K+ SG  A+ GN LTPTQV   P V ++A   A
Sbjct: 1   MAAEAFTKHEVIPDVLASNPPSKVVSVKFNSGVEANLGNVLTPTQVKDTPEVKWDAEPGA 60

Query: 277 FYTLVFTDPDNYDGPELVYRE 339
            YTL+ TDPD     E  YRE
Sbjct: 61  LYTLIKTDPDAPSRKEPTYRE 81



 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 19/33 (57%), Positives = 24/33 (72%)
 Frame = +3

Query: 552 FAEKYNLGAPVAGXFYRAQFDDYVPQLYKXLGA 650
           F  K+ LGAPV G  ++A++DDYVP L K LGA
Sbjct: 153 FVAKHKLGAPVFGNLFQAEYDDYVPILNKQLGA 185



 Score = 34.7 bits (76), Expect = 0.093
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 446 RYVYILYKQPGKLXFDEK-RLTNTSIDGRASFLHEEVR*KVQPGGACRRXLLQSAVRRLC 622
           RYVY++YKQ G++   E  RLTNTS D R  +   +   K + G      L Q+      
Sbjct: 117 RYVYLIYKQSGRIEDAEHGRLTNTSGDKRGGWKAADFVAKHKLGAPVFGNLFQAEYDDYV 176

Query: 623 PTALQXLG 646
           P   + LG
Sbjct: 177 PILNKQLG 184


>AL034365-5|CAA22258.1|  172|Caenorhabditis elegans Hypothetical
           protein Y69E1A.5 protein.
          Length = 172

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 534 RFSTKKFAEKYNLGAPVAGXFYRAQFD 614
           +F+ K+F EK  LG P+AG F+ AQ +
Sbjct: 145 KFNVKQFIEKNKLGDPIAGNFFLAQHE 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,925,723
Number of Sequences: 27780
Number of extensions: 174543
Number of successful extensions: 348
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)